Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 2310020H05Rik-201ENSMUST00000189489 720 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
Traf1P39428 Gm37996-201ENSMUST00000191859 367 ntBASIC6.16□□□□□ -1.42
Traf1P39428 Gm18997-201ENSMUST00000216353 822 ntBASIC6.16□□□□□ -1.42
Traf1P39428 AC159379.1-201ENSMUST00000218192 620 ntTSL 5 BASIC6.16□□□□□ -1.42
Traf1P39428 Gm30262-201ENSMUST00000219137 791 ntTSL 5 BASIC6.16□□□□□ -1.42
Traf1P39428 AC124732.4-201ENSMUST00000220930 1274 ntBASIC6.16□□□□□ -1.42
Traf1P39428 AC153153.2-201ENSMUST00000223572 411 ntBASIC6.16□□□□□ -1.42
Traf1P39428 Ube2d4-201ENSMUST00000075109 406 ntTSL 5 BASIC6.16□□□□□ -1.42
Traf1P39428 n-R5s62-201ENSMUST00000082780 96 ntBASIC6.16□□□□□ -1.42
Traf1P39428 Gm7676-201ENSMUST00000084055 319 ntBASIC6.16□□□□□ -1.42
Traf1P39428 Olfr107-204ENSMUST00000215974 2282 ntAPPRIS P1 TSL 5 BASIC6.16□□□□□ -1.42
Traf1P39428 Dgkk-201ENSMUST00000067410 7155 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
Traf1P39428 Vmn1r1-202ENSMUST00000227586 3766 ntAPPRIS P1 BASIC6.16□□□□□ -1.42
Traf1P39428 Cnot2-213ENSMUST00000169921 2120 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
Traf1P39428 Psg20-201ENSMUST00000076677 1428 ntAPPRIS ALT2 TSL 5 BASIC6.16□□□□□ -1.42
Traf1P39428 Ktn1-209ENSMUST00000187262 3913 ntAPPRIS ALT2 TSL 5 BASIC6.16□□□□□ -1.42
Traf1P39428 Angel2-201ENSMUST00000027947 3562 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
Traf1P39428 Zfp229-203ENSMUST00000182603 4315 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
Traf1P39428 Gm37226-201ENSMUST00000191644 3255 ntBASIC6.16□□□□□ -1.42
Traf1P39428 Vmn2r109-201ENSMUST00000167093 2577 ntAPPRIS P1 TSL 5 BASIC6.15□□□□□ -1.42
Traf1P39428 AC116726.1-201ENSMUST00000215028 3497 ntBASIC6.15□□□□□ -1.42
Traf1P39428 Lrrc9-206ENSMUST00000162159 4739 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
Traf1P39428 Lingo2-210ENSMUST00000164772 3562 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
Traf1P39428 A530083M17Rik-201ENSMUST00000199877 3376 ntBASIC6.15□□□□□ -1.42
Traf1P39428 Svs3a-202ENSMUST00000109370 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC6.15□□□□□ -1.42
Traf1P39428 Gm6754-201ENSMUST00000117124 913 ntBASIC6.15□□□□□ -1.42
Traf1P39428 Xlr3e-ps-201ENSMUST00000119644 682 ntBASIC6.15□□□□□ -1.42
Traf1P39428 Xlr3d-ps-201ENSMUST00000121687 658 ntBASIC6.15□□□□□ -1.42
Traf1P39428 Gm25389-201ENSMUST00000157340 286 ntBASIC6.15□□□□□ -1.42
Traf1P39428 Gm24477-201ENSMUST00000157438 103 ntBASIC6.15□□□□□ -1.42
Traf1P39428 Obox1-205ENSMUST00000173443 835 ntAPPRIS P1 TSL 5 BASIC6.15□□□□□ -1.42
Traf1P39428 Obox2-204ENSMUST00000174305 834 ntAPPRIS P1 TSL 5 BASIC6.15□□□□□ -1.42
Traf1P39428 Pkib-209ENSMUST00000177325 540 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
Traf1P39428 1500015L24Rik-202ENSMUST00000179640 780 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
Traf1P39428 Gm8941-201ENSMUST00000181451 899 ntBASIC6.15□□□□□ -1.42
Traf1P39428 4930519F24Rik-201ENSMUST00000185764 579 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
Traf1P39428 Gm19029-201ENSMUST00000189923 564 ntBASIC6.15□□□□□ -1.42
Traf1P39428 Gm18717-201ENSMUST00000192744 1241 ntBASIC6.15□□□□□ -1.42
Traf1P39428 Obox4-ps32-201ENSMUST00000196512 537 ntBASIC6.15□□□□□ -1.42
Traf1P39428 Gm44281-201ENSMUST00000203090 166 ntBASIC6.15□□□□□ -1.42
Traf1P39428 Gm43893-201ENSMUST00000203362 437 ntTSL 3 BASIC6.15□□□□□ -1.42
Traf1P39428 Gm44184-201ENSMUST00000204290 132 ntBASIC6.15□□□□□ -1.42
Traf1P39428 Gm29154-234ENSMUST00000215272 750 ntTSL 5 BASIC6.15□□□□□ -1.42
Traf1P39428 Gm40692-201ENSMUST00000220411 491 ntBASIC6.15□□□□□ -1.42
Traf1P39428 AC161609.1-201ENSMUST00000225878 474 ntBASIC6.15□□□□□ -1.42
Traf1P39428 CT030238.1-201ENSMUST00000228393 442 ntBASIC6.15□□□□□ -1.42
Traf1P39428 Olfr552-201ENSMUST00000098223 954 ntAPPRIS P1 BASIC6.15□□□□□ -1.42
Traf1P39428 Gm37018-201ENSMUST00000192441 3869 ntBASIC6.15□□□□□ -1.42
Traf1P39428 Tfec-201ENSMUST00000031533 1787 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
Traf1P39428 9830107B12Rik-201ENSMUST00000063481 3639 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
Traf1P39428 Zfp931-201ENSMUST00000108923 1372 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
Traf1P39428 Il31ra-201ENSMUST00000051756 3680 ntAPPRIS P2 TSL 1 (best) BASIC6.15□□□□□ -1.43
Traf1P39428 Vmn1r90-206ENSMUST00000227566 6901 ntAPPRIS ALT2 BASIC6.15□□□□□ -1.43
Traf1P39428 Olfr1250-203ENSMUST00000215730 4632 ntAPPRIS P1 TSL 5 BASIC6.15□□□□□ -1.43
Traf1P39428 Cfap97-201ENSMUST00000034048 4619 ntAPPRIS P2 TSL 1 (best) BASIC6.15□□□□□ -1.43
Traf1P39428 AC117570.1-201ENSMUST00000214015 1886 ntTSL 5 BASIC6.15□□□□□ -1.43
Traf1P39428 Vmn2r5-201ENSMUST00000170270 2484 ntAPPRIS P2 TSL 5 BASIC6.15□□□□□ -1.43
Traf1P39428 Cntnap5b-201ENSMUST00000086738 4027 ntAPPRIS P1 TSL 2 BASIC6.15□□□□□ -1.43
Traf1P39428 AC155941.5-201ENSMUST00000218925 1505 ntTSL 5 BASIC6.15□□□□□ -1.43
Traf1P39428 Vmn1r171-201ENSMUST00000078458 1581 ntAPPRIS P2 BASIC6.14□□□□□ -1.43
Traf1P39428 Gm44751-201ENSMUST00000208302 4387 ntBASIC6.14□□□□□ -1.43
Traf1P39428 Impg1-201ENSMUST00000085289 3356 ntAPPRIS ALT2 TSL 5 BASIC6.14□□□□□ -1.43
Traf1P39428 Cyp2c38-201ENSMUST00000035488 2869 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
Traf1P39428 Smarca2-220ENSMUST00000207054 2333 ntTSL 5 BASIC6.14□□□□□ -1.43
Traf1P39428 Glmn-203ENSMUST00000100949 1759 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
Traf1P39428 Gm44424-201ENSMUST00000203438 1826 ntBASIC6.14□□□□□ -1.43
Traf1P39428 Vmn1r20-202ENSMUST00000227909 3709 ntAPPRIS P1 BASIC6.14□□□□□ -1.43
Traf1P39428 B3galt1-202ENSMUST00000112346 4977 ntAPPRIS P1 BASIC6.14□□□□□ -1.43
Traf1P39428 Gm7206-201ENSMUST00000117730 508 ntBASIC6.14□□□□□ -1.43
Traf1P39428 Gm14876-201ENSMUST00000120795 327 ntBASIC6.14□□□□□ -1.43
Traf1P39428 n-R5s24-201ENSMUST00000122518 117 ntBASIC6.14□□□□□ -1.43
Traf1P39428 Bloc1s1-202ENSMUST00000131271 475 ntTSL 5 BASIC6.14□□□□□ -1.43
Traf1P39428 Vmn1r-ps66-201ENSMUST00000173436 612 ntBASIC6.14□□□□□ -1.43
Traf1P39428 Gm23633-201ENSMUST00000175293 119 ntBASIC6.14□□□□□ -1.43
Traf1P39428 Gm21860-201ENSMUST00000177893 309 ntAPPRIS P1 BASIC6.14□□□□□ -1.43
Traf1P39428 Gm21748-201ENSMUST00000179623 309 ntAPPRIS P1 BASIC6.14□□□□□ -1.43
Traf1P39428 Gm37444-201ENSMUST00000193605 439 ntBASIC6.14□□□□□ -1.43
Traf1P39428 Gm18599-201ENSMUST00000206729 1125 ntBASIC6.14□□□□□ -1.43
Traf1P39428 Gm44776-201ENSMUST00000207212 381 ntBASIC6.14□□□□□ -1.43
Traf1P39428 CAAA01216754.4-201ENSMUST00000216416 802 ntTSL 5 BASIC6.14□□□□□ -1.43
Traf1P39428 AC153840.1-201ENSMUST00000219685 313 ntBASIC6.14□□□□□ -1.43
Traf1P39428 AC155922.1-201ENSMUST00000220100 373 ntBASIC6.14□□□□□ -1.43
Traf1P39428 Gm46430-203ENSMUST00000221389 1049 ntTSL 5 BASIC6.14□□□□□ -1.43
Traf1P39428 Vmn2r-ps56-201ENSMUST00000174814 2596 ntBASIC6.14□□□□□ -1.43
Traf1P39428 Adam25-201ENSMUST00000096663 2621 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
Traf1P39428 Tbl1xr1-201ENSMUST00000063988 6667 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
Traf1P39428 Inpp4b-203ENSMUST00000109852 4095 ntAPPRIS ALT2 TSL 5 BASIC6.14□□□□□ -1.43
Traf1P39428 Ctsq-201ENSMUST00000021888 1378 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
Traf1P39428 AC117608.2-201ENSMUST00000224124 1363 ntBASIC6.14□□□□□ -1.43
Traf1P39428 Olfr690-203ENSMUST00000216230 2085 ntAPPRIS P1 TSL 5 BASIC6.14□□□□□ -1.43
Traf1P39428 Gm28074-201ENSMUST00000190424 1497 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
Traf1P39428 4933403O08Rik-202ENSMUST00000152343 1520 ntAPPRIS P2 TSL 1 (best) BASIC6.14□□□□□ -1.43
Traf1P39428 4930509J09Rik-201ENSMUST00000194514 1526 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
Traf1P39428 Gm10441-201ENSMUST00000200950 1546 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
Traf1P39428 Btf3l4-204ENSMUST00000102742 3141 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
Traf1P39428 Gm45555-201ENSMUST00000210028 2602 ntBASIC6.13□□□□□ -1.43
Traf1P39428 CT025556.1-201ENSMUST00000222965 1884 ntBASIC6.13□□□□□ -1.43
Traf1P39428 Olfr49-202ENSMUST00000216214 5717 ntAPPRIS P1 TSL 5 BASIC6.13□□□□□ -1.43
Traf1P39428 Rbm46os-201ENSMUST00000131274 3261 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
Traf1P39428 Vmn1r185-203ENSMUST00000227264 5589 ntAPPRIS P1 BASIC6.13□□□□□ -1.43
Retrieved 100 of 76,532 protein–RNA pairs in 61.2 ms