Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Ktn1-224ENSMUST00000191018 4033 ntAPPRIS ALT2 TSL 5 BASIC6.19□□□□□ -1.42
Traf1P39428 A730004F24Rik-202ENSMUST00000195454 1704 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
Traf1P39428 Pum2-210ENSMUST00000169089 3295 ntAPPRIS ALT2 TSL 5 BASIC6.19□□□□□ -1.42
Traf1P39428 Vmn1r235-201ENSMUST00000060603 1781 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
Traf1P39428 Zfp583-202ENSMUST00000108560 2154 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
Traf1P39428 Gm38189-201ENSMUST00000194495 1457 ntBASIC6.18□□□□□ -1.42
Traf1P39428 Igkv1-132-201ENSMUST00000103305 362 ntAPPRIS P1 BASIC6.18□□□□□ -1.42
Traf1P39428 Igkv10-95-201ENSMUST00000103329 287 ntAPPRIS P1 BASIC6.18□□□□□ -1.42
Traf1P39428 Gm24429-201ENSMUST00000104076 132 ntBASIC6.18□□□□□ -1.42
Traf1P39428 Gm14788-201ENSMUST00000119457 375 ntBASIC6.18□□□□□ -1.42
Traf1P39428 Gm11255-201ENSMUST00000120448 1180 ntBASIC6.18□□□□□ -1.42
Traf1P39428 Gm15022-201ENSMUST00000122074 746 ntBASIC6.18□□□□□ -1.42
Traf1P39428 4930558G05Rik-201ENSMUST00000122848 494 ntTSL 5 BASIC6.18□□□□□ -1.42
Traf1P39428 Vmn2r-ps124-201ENSMUST00000176236 903 ntBASIC6.18□□□□□ -1.42
Traf1P39428 Mir6343-201ENSMUST00000183584 84 ntBASIC6.18□□□□□ -1.42
Traf1P39428 Gm24949-201ENSMUST00000183609 215 ntBASIC6.18□□□□□ -1.42
Traf1P39428 Mir7222-201ENSMUST00000183740 75 ntBASIC6.18□□□□□ -1.42
Traf1P39428 Gm28877-201ENSMUST00000191349 604 ntBASIC6.18□□□□□ -1.42
Traf1P39428 Gm34176-201ENSMUST00000192621 474 ntBASIC6.18□□□□□ -1.42
Traf1P39428 Gm37719-201ENSMUST00000194615 292 ntBASIC6.18□□□□□ -1.42
Traf1P39428 Gm20946-201ENSMUST00000212367 461 ntBASIC6.18□□□□□ -1.42
Traf1P39428 AC091522.1-201ENSMUST00000213934 850 ntTSL 5 BASIC6.18□□□□□ -1.42
Traf1P39428 AC183268.2-201ENSMUST00000214513 446 ntBASIC6.18□□□□□ -1.42
Traf1P39428 AC153505.2-201ENSMUST00000217741 277 ntBASIC6.18□□□□□ -1.42
Traf1P39428 AC101709.1-201ENSMUST00000220276 909 ntTSL 5 BASIC6.18□□□□□ -1.42
Traf1P39428 Prl2c2-203ENSMUST00000221612 596 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
Traf1P39428 Olfr1341-201ENSMUST00000061215 939 ntAPPRIS P1 BASIC6.18□□□□□ -1.42
Traf1P39428 Gm4963-201ENSMUST00000072718 378 ntBASIC6.18□□□□□ -1.42
Traf1P39428 Gm25139-201ENSMUST00000083247 210 ntBASIC6.18□□□□□ -1.42
Traf1P39428 Mir31-201ENSMUST00000083474 106 ntBASIC6.18□□□□□ -1.42
Traf1P39428 Tbc1d32-201ENSMUST00000099739 7240 ntAPPRIS P1 TSL 5 BASIC6.18□□□□□ -1.42
Traf1P39428 Ranbp3l-201ENSMUST00000053308 3017 ntAPPRIS P1 TSL 5 BASIC6.18□□□□□ -1.42
Traf1P39428 Dnah14-209ENSMUST00000208001 13696 ntAPPRIS P1 TSL 5 BASIC6.18□□□□□ -1.42
Traf1P39428 Phc3-209ENSMUST00000168645 10976 ntAPPRIS P3 TSL 1 (best) BASIC6.18□□□□□ -1.42
Traf1P39428 Olfr328-203ENSMUST00000215717 2793 ntAPPRIS P1 TSL 5 BASIC6.18□□□□□ -1.42
Traf1P39428 Ppm1k-201ENSMUST00000042766 5560 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
Traf1P39428 Vmn1r171-207ENSMUST00000227774 2867 ntAPPRIS ALT2 BASIC6.17□□□□□ -1.42
Traf1P39428 Gm45222-201ENSMUST00000207029 4307 ntBASIC6.17□□□□□ -1.42
Traf1P39428 B530045E10Rik-202ENSMUST00000189035 3138 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
Traf1P39428 Gm5460-201ENSMUST00000100719 1903 ntAPPRIS P2 TSL 1 (best) BASIC6.17□□□□□ -1.42
Traf1P39428 Gm43359-201ENSMUST00000197944 2200 ntBASIC6.17□□□□□ -1.42
Traf1P39428 C230071H17Rik-201ENSMUST00000196044 2973 ntBASIC6.17□□□□□ -1.42
Traf1P39428 Hgf-204ENSMUST00000199581 3468 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
Traf1P39428 Scn1a-204ENSMUST00000112371 8287 ntAPPRIS ALT1 TSL 5 BASIC6.17□□□□□ -1.42
Traf1P39428 Defb30-201ENSMUST00000100490 307 ntAPPRIS P2 TSL 1 (best) BASIC6.17□□□□□ -1.42
Traf1P39428 Gm22266-201ENSMUST00000104011 138 ntBASIC6.17□□□□□ -1.42
Traf1P39428 Gm24789-201ENSMUST00000104282 131 ntBASIC6.17□□□□□ -1.42
Traf1P39428 Slamf7-201ENSMUST00000111276 1082 ntAPPRIS P3 TSL 1 (best) BASIC6.17□□□□□ -1.42
Traf1P39428 Gm11699-201ENSMUST00000119016 401 ntBASIC6.17□□□□□ -1.42
Traf1P39428 3110004A20Rik-201ENSMUST00000123904 385 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
Traf1P39428 Gm11802-201ENSMUST00000137749 653 ntTSL 3 BASIC6.17□□□□□ -1.42
Traf1P39428 C030037F17Rik-201ENSMUST00000155211 406 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
Traf1P39428 Gm11507-201ENSMUST00000156462 412 ntBASIC6.17□□□□□ -1.42
Traf1P39428 Gm23441-201ENSMUST00000157268 127 ntBASIC6.17□□□□□ -1.42
Traf1P39428 Gm17472-201ENSMUST00000167638 352 ntAPPRIS P1 TSL 5 BASIC6.17□□□□□ -1.42
Traf1P39428 Gm3727-201ENSMUST00000168458 995 ntAPPRIS P5 TSL 5 BASIC6.17□□□□□ -1.42
Traf1P39428 Gm8256-201ENSMUST00000169178 453 ntBASIC6.17□□□□□ -1.42
Traf1P39428 Gm28061-201ENSMUST00000189085 807 ntBASIC6.17□□□□□ -1.42
Traf1P39428 7420461P10Rik-203ENSMUST00000193898 545 ntAPPRIS ALT2 TSL 3 BASIC6.17□□□□□ -1.42
Traf1P39428 Gm37445-201ENSMUST00000195318 242 ntBASIC6.17□□□□□ -1.42
Traf1P39428 Gm42542-201ENSMUST00000197978 268 ntBASIC6.17□□□□□ -1.42
Traf1P39428 Nts-201ENSMUST00000020040 1248 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
Traf1P39428 Gm2011-203ENSMUST00000203750 435 ntBASIC6.17□□□□□ -1.42
Traf1P39428 Gm21041-201ENSMUST00000214829 823 ntBASIC6.17□□□□□ -1.42
Traf1P39428 AC110816.1-201ENSMUST00000218559 980 ntBASIC6.17□□□□□ -1.42
Traf1P39428 AC160031.1-201ENSMUST00000219914 522 ntBASIC6.17□□□□□ -1.42
Traf1P39428 AC154323.1-201ENSMUST00000228329 1231 ntBASIC6.17□□□□□ -1.42
Traf1P39428 Gm4861-201ENSMUST00000068546 957 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
Traf1P39428 Gm24207-201ENSMUST00000082781 108 ntBASIC6.17□□□□□ -1.42
Traf1P39428 Olfr640-201ENSMUST00000084799 945 ntAPPRIS P1 BASIC6.17□□□□□ -1.42
Traf1P39428 Gm9386-201ENSMUST00000095195 381 ntBASIC6.17□□□□□ -1.42
Traf1P39428 Gm9923-201ENSMUST00000217785 1836 ntBASIC6.17□□□□□ -1.42
Traf1P39428 Olfr424-202ENSMUST00000214751 1642 ntAPPRIS P1 TSL 5 BASIC6.17□□□□□ -1.42
Traf1P39428 Cnot4-202ENSMUST00000114989 3279 ntAPPRIS ALT1 TSL 1 (best) BASIC6.17□□□□□ -1.42
Traf1P39428 Pfkfb2-202ENSMUST00000066863 4425 ntAPPRIS P3 TSL 1 (best) BASIC6.17□□□□□ -1.42
Traf1P39428 Fam107b-209ENSMUST00000226435 3602 ntBASIC6.17□□□□□ -1.42
Traf1P39428 Gm43567-201ENSMUST00000197581 1978 ntBASIC6.17□□□□□ -1.42
Traf1P39428 Olfr676-204ENSMUST00000219602 2802 ntAPPRIS P1 TSL 5 BASIC6.17□□□□□ -1.42
Traf1P39428 Trim5-202ENSMUST00000098179 3655 ntAPPRIS P2 TSL 1 (best) BASIC6.17□□□□□ -1.42
Traf1P39428 Olfr357-202ENSMUST00000213218 5367 ntAPPRIS P1 TSL 5 BASIC6.17□□□□□ -1.42
Traf1P39428 Mtx3-201ENSMUST00000076169 6275 ntAPPRIS P1 TSL 5 BASIC6.16□□□□□ -1.42
Traf1P39428 Gm19035-201ENSMUST00000193299 1742 ntBASIC6.16□□□□□ -1.42
Traf1P39428 Pramef8-202ENSMUST00000059790 3886 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
Traf1P39428 Olfr1427-202ENSMUST00000215374 3342 ntAPPRIS P1 TSL 5 BASIC6.16□□□□□ -1.42
Traf1P39428 Oog4-202ENSMUST00000073641 1817 ntAPPRIS ALT2 TSL 1 (best) BASIC6.16□□□□□ -1.42
Traf1P39428 Gm44235-201ENSMUST00000204312 3058 ntBASIC6.16□□□□□ -1.42
Traf1P39428 Gm23274-201ENSMUST00000104056 130 ntBASIC6.16□□□□□ -1.42
Traf1P39428 Gm11550-201ENSMUST00000118210 699 ntBASIC6.16□□□□□ -1.42
Traf1P39428 H3f3c-201ENSMUST00000119459 411 ntBASIC6.16□□□□□ -1.42
Traf1P39428 1700061H18Rik-202ENSMUST00000147221 564 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
Traf1P39428 4930519D14Rik-201ENSMUST00000151471 1137 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
Traf1P39428 Gm11846-201ENSMUST00000155156 515 ntTSL 2 BASIC6.16□□□□□ -1.42
Traf1P39428 4933417A18Rik-201ENSMUST00000160279 1045 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
Traf1P39428 Klrb1a-202ENSMUST00000171306 989 ntAPPRIS ALT2 TSL 1 (best) BASIC6.16□□□□□ -1.42
Traf1P39428 Gm5726-201ENSMUST00000173886 924 ntAPPRIS P1 BASIC6.16□□□□□ -1.42
Traf1P39428 Gm8677-201ENSMUST00000174637 924 ntAPPRIS P1 BASIC6.16□□□□□ -1.42
Traf1P39428 Gm21909-201ENSMUST00000178260 439 ntBASIC6.16□□□□□ -1.42
Traf1P39428 Gm26554-201ENSMUST00000180801 845 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
Traf1P39428 Gm8604-201ENSMUST00000183150 965 ntBASIC6.16□□□□□ -1.42
Traf1P39428 Gm27355-201ENSMUST00000185045 128 ntBASIC6.16□□□□□ -1.42
Retrieved 100 of 76,532 protein–RNA pairs in 72.6 ms