Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Ldlrad1-201ENSMUST00000094916 1093 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
Scn11aQ9R053 Rnpc3-203ENSMUST00000106536 1839 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
Scn11aQ9R053 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Scn11aQ9R053 Proc-201ENSMUST00000171765 1566 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
Scn11aQ9R053 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Scn11aQ9R053 0610012G03Rik-201ENSMUST00000202722 1445 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
Scn11aQ9R053 AC123834.2-201ENSMUST00000224038 2340 ntBASIC21.18■□□□□ 0.98
Scn11aQ9R053 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Scn11aQ9R053 Hist1h2bf-201ENSMUST00000105106 461 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
Scn11aQ9R053 Ctnnal1-202ENSMUST00000107612 850 ntTSL 3 BASIC21.18■□□□□ 0.98
Scn11aQ9R053 Gm7638-201ENSMUST00000121348 967 ntBASIC21.18■□□□□ 0.98
Scn11aQ9R053 Prss27-201ENSMUST00000059482 1253 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Scn11aQ9R053 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Scn11aQ9R053 Bdkrb1-202ENSMUST00000182899 1313 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
Scn11aQ9R053 Bdkrb1-201ENSMUST00000041229 1338 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
Scn11aQ9R053 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Scn11aQ9R053 Mtg2-202ENSMUST00000108901 1444 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
Scn11aQ9R053 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Scn11aQ9R053 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Scn11aQ9R053 Gm6093-201ENSMUST00000221792 1623 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Scn11aQ9R053 Gm14859-201ENSMUST00000117752 357 ntBASIC21.17■□□□□ 0.98
Scn11aQ9R053 Gm28876-201ENSMUST00000188137 703 ntTSL 3 BASIC21.17■□□□□ 0.98
Scn11aQ9R053 Prps1l3-201ENSMUST00000139049 1720 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Scn11aQ9R053 Fez2-201ENSMUST00000070039 1939 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
Scn11aQ9R053 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Scn11aQ9R053 Mzt2-202ENSMUST00000117136 758 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Scn11aQ9R053 Gm16061-201ENSMUST00000122167 857 ntBASIC21.16■□□□□ 0.98
Scn11aQ9R053 Ramp2-204ENSMUST00000129680 1178 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Scn11aQ9R053 Gm45442-201ENSMUST00000210038 411 ntTSL 3 BASIC21.16■□□□□ 0.98
Scn11aQ9R053 Nkx2-6-201ENSMUST00000062437 1134 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Scn11aQ9R053 0610009B22Rik-201ENSMUST00000007921 813 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Scn11aQ9R053 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Scn11aQ9R053 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Scn11aQ9R053 Map3k7cl-201ENSMUST00000026700 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Scn11aQ9R053 Cpsf4-207ENSMUST00000162244 1387 ntAPPRIS P4 TSL 1 (best) BASIC21.15■□□□□ 0.98
Scn11aQ9R053 4930544I03Rik-201ENSMUST00000181184 1276 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Scn11aQ9R053 Hint1-201ENSMUST00000020504 636 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Scn11aQ9R053 Grcc10-201ENSMUST00000004389 863 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Scn11aQ9R053 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
Scn11aQ9R053 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
Scn11aQ9R053 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
Scn11aQ9R053 B3galnt2-204ENSMUST00000221300 2397 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Scn11aQ9R053 Aida-206ENSMUST00000193625 1810 ntTSL 3 BASIC21.15■□□□□ 0.98
Scn11aQ9R053 Dvl1-201ENSMUST00000030948 3358 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Scn11aQ9R053 Ccdc125-202ENSMUST00000170347 1216 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Scn11aQ9R053 Klf13-202ENSMUST00000183817 599 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Scn11aQ9R053 Gm9694-201ENSMUST00000193347 1189 ntBASIC21.15■□□□□ 0.98
Scn11aQ9R053 Gm8994-201ENSMUST00000077886 1236 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
Scn11aQ9R053 Stac-201ENSMUST00000035083 2644 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Scn11aQ9R053 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Scn11aQ9R053 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Scn11aQ9R053 Paics-201ENSMUST00000031160 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Scn11aQ9R053 Elac2-203ENSMUST00000108697 2612 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.98
Scn11aQ9R053 Atp5c1-202ENSMUST00000114896 1735 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Scn11aQ9R053 Gpr137-201ENSMUST00000025909 1717 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Scn11aQ9R053 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Scn11aQ9R053 Gm17661-201ENSMUST00000170317 270 ntBASIC21.14■□□□□ 0.97
Scn11aQ9R053 G730003C15Rik-202ENSMUST00000189096 2309 ntBASIC21.14■□□□□ 0.97
Scn11aQ9R053 Gm45623-201ENSMUST00000210744 1457 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
Scn11aQ9R053 Akain1-201ENSMUST00000169935 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Scn11aQ9R053 4930426D05Rik-202ENSMUST00000139804 1650 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Scn11aQ9R053 Gapdh-202ENSMUST00000117757 1273 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Scn11aQ9R053 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Scn11aQ9R053 Shc3-201ENSMUST00000021898 1537 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Scn11aQ9R053 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Scn11aQ9R053 Arnt-204ENSMUST00000107160 783 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Scn11aQ9R053 Gm45141-201ENSMUST00000206502 1888 ntBASIC21.13■□□□□ 0.97
Scn11aQ9R053 Hint2-201ENSMUST00000030192 610 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Scn11aQ9R053 Sh3bp1-202ENSMUST00000061239 1917 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Scn11aQ9R053 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Scn11aQ9R053 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
Scn11aQ9R053 Tmem47-203ENSMUST00000171953 1801 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Scn11aQ9R053 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Scn11aQ9R053 Cutc-202ENSMUST00000112047 1233 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Scn11aQ9R053 Gm7284-201ENSMUST00000131667 944 ntBASIC21.12■□□□□ 0.97
Scn11aQ9R053 Gm26938-201ENSMUST00000182839 744 ntAPPRIS P1 TSL 3 BASIC21.12■□□□□ 0.97
Scn11aQ9R053 Nudt17-204ENSMUST00000200387 2108 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Scn11aQ9R053 Gm31727-201ENSMUST00000210102 360 ntTSL 3 BASIC21.12■□□□□ 0.97
Scn11aQ9R053 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Scn11aQ9R053 Nmnat3-202ENSMUST00000112937 1898 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Scn11aQ9R053 Shq1-204ENSMUST00000170667 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Scn11aQ9R053 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Scn11aQ9R053 Rpl18a-206ENSMUST00000212709 700 ntTSL 2 BASIC21.11■□□□□ 0.97
Scn11aQ9R053 2310039H08Rik-201ENSMUST00000071430 773 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
Scn11aQ9R053 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Scn11aQ9R053 Csf3-201ENSMUST00000038886 1413 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Scn11aQ9R053 Gm15545-202ENSMUST00000141011 899 ntTSL 3 BASIC21.1■□□□□ 0.97
Scn11aQ9R053 Fbxo9-203ENSMUST00000159099 1201 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Scn11aQ9R053 Pih1d2-201ENSMUST00000000171 1256 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Scn11aQ9R053 Gm9745-201ENSMUST00000021573 684 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
Scn11aQ9R053 Gm26709-203ENSMUST00000223260 715 ntTSL 5 BASIC21.1■□□□□ 0.97
Scn11aQ9R053 Il3ra-202ENSMUST00000223589 738 ntBASIC21.1■□□□□ 0.97
Scn11aQ9R053 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
Scn11aQ9R053 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Scn11aQ9R053 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC21.1■□□□□ 0.97
Scn11aQ9R053 BC017158-201ENSMUST00000033044 2627 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Scn11aQ9R053 Kdelr2-201ENSMUST00000110731 1829 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Scn11aQ9R053 4933406B15Rik-201ENSMUST00000220065 1182 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Scn11aQ9R053 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Scn11aQ9R053 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 12.1 ms