Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Mchr1-201ENSMUST00000166855 2188 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim54Q9ERP3 Alg5-201ENSMUST00000044567 1471 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim54Q9ERP3 Atxn7l2-202ENSMUST00000117409 2321 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
Trim54Q9ERP3 Ankle1-202ENSMUST00000120725 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim54Q9ERP3 Gm5784-201ENSMUST00000179344 2478 ntBASIC19.22■□□□□ 0.67
Trim54Q9ERP3 Camta1-204ENSMUST00000105670 4961 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Trim54Q9ERP3 Fbxo7-203ENSMUST00000120344 1655 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim54Q9ERP3 Slc2a13-202ENSMUST00000109283 6536 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim54Q9ERP3 Ablim1-204ENSMUST00000111524 1251 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Trim54Q9ERP3 Izumo1r-204ENSMUST00000121116 726 ntTSL 2 BASIC19.21■□□□□ 0.67
Trim54Q9ERP3 Ndufa12-201ENSMUST00000020209 1110 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim54Q9ERP3 Fgf8-201ENSMUST00000026240 1117 ntAPPRIS P4 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim54Q9ERP3 H2-DMa-201ENSMUST00000042121 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim54Q9ERP3 Pdp1-206ENSMUST00000108302 2525 ntTSL 3 BASIC19.21■□□□□ 0.67
Trim54Q9ERP3 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim54Q9ERP3 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim54Q9ERP3 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim54Q9ERP3 Ntng1-207ENSMUST00000131027 1485 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Trim54Q9ERP3 Ntng1-209ENSMUST00000138344 1452 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Trim54Q9ERP3 Tfap4-201ENSMUST00000005862 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim54Q9ERP3 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim54Q9ERP3 Wasf3-201ENSMUST00000016143 5196 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.66
Trim54Q9ERP3 Krcc1-203ENSMUST00000204436 1687 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim54Q9ERP3 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim54Q9ERP3 Unc13a-208ENSMUST00000177517 5654 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
Trim54Q9ERP3 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim54Q9ERP3 Tspan9-201ENSMUST00000032503 1405 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim54Q9ERP3 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Trim54Q9ERP3 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC19.2■□□□□ 0.66
Trim54Q9ERP3 Rps2-ps2-201ENSMUST00000194305 881 ntBASIC19.2■□□□□ 0.66
Trim54Q9ERP3 Calml4-206ENSMUST00000215870 803 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Trim54Q9ERP3 Arl2-201ENSMUST00000025893 1144 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim54Q9ERP3 Npepl1-201ENSMUST00000044415 2467 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim54Q9ERP3 Hcn2-202ENSMUST00000099513 3195 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim54Q9ERP3 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim54Q9ERP3 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim54Q9ERP3 Mxi1-201ENSMUST00000003870 5156 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Trim54Q9ERP3 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Trim54Q9ERP3 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Trim54Q9ERP3 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim54Q9ERP3 Echdc2-204ENSMUST00000116309 1238 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim54Q9ERP3 Josd2-206ENSMUST00000121922 684 ntTSL 5 BASIC19.19■□□□□ 0.66
Trim54Q9ERP3 Ddah2-204ENSMUST00000174493 1254 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Trim54Q9ERP3 Gadd45b-203ENSMUST00000220246 732 ntTSL 2 BASIC19.19■□□□□ 0.66
Trim54Q9ERP3 3110070M22Rik-201ENSMUST00000099148 1123 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
Trim54Q9ERP3 Adat2-201ENSMUST00000019944 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim54Q9ERP3 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim54Q9ERP3 Tarbp1-201ENSMUST00000170518 6383 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Trim54Q9ERP3 Acot7-203ENSMUST00000105652 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim54Q9ERP3 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Trim54Q9ERP3 Serbp1-203ENSMUST00000203077 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim54Q9ERP3 Gata5os-201ENSMUST00000069943 1678 ntTSL 2 BASIC19.18■□□□□ 0.66
Trim54Q9ERP3 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim54Q9ERP3 Abhd11-206ENSMUST00000154469 1473 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Trim54Q9ERP3 Casp6-201ENSMUST00000029626 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim54Q9ERP3 Gm5901-201ENSMUST00000106805 1140 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
Trim54Q9ERP3 Bex3-202ENSMUST00000113112 826 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim54Q9ERP3 Tpsg1-202ENSMUST00000160377 1040 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Trim54Q9ERP3 Gm3331-201ENSMUST00000183423 1017 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Trim54Q9ERP3 Chmp2a-203ENSMUST00000210587 930 ntAPPRIS P1 TSL 3 BASIC19.18■□□□□ 0.66
Trim54Q9ERP3 Izumo2-201ENSMUST00000085422 632 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim54Q9ERP3 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim54Q9ERP3 Ythdf3-201ENSMUST00000108345 5102 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim54Q9ERP3 Wnt10b-202ENSMUST00000166022 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim54Q9ERP3 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim54Q9ERP3 Rfx7-201ENSMUST00000093820 7988 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
Trim54Q9ERP3 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim54Q9ERP3 Podxl2-202ENSMUST00000061262 2195 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim54Q9ERP3 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC19.17■□□□□ 0.66
Trim54Q9ERP3 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Trim54Q9ERP3 Lsm1-203ENSMUST00000211168 343 ntTSL 3 BASIC19.17■□□□□ 0.66
Trim54Q9ERP3 Aga-203ENSMUST00000211424 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim54Q9ERP3 AC159205.6-201ENSMUST00000224935 887 ntBASIC19.17■□□□□ 0.66
Trim54Q9ERP3 Cenps-201ENSMUST00000030813 1110 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim54Q9ERP3 Hist3h2ba-201ENSMUST00000078267 614 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
Trim54Q9ERP3 Trmo-202ENSMUST00000086563 1554 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim54Q9ERP3 Olfr94-203ENSMUST00000222190 1611 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
Trim54Q9ERP3 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC19.17■□□□□ 0.66
Trim54Q9ERP3 AC122335.2-201ENSMUST00000213901 6181 ntBASIC19.17■□□□□ 0.66
Trim54Q9ERP3 Dhx36-201ENSMUST00000029336 5620 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim54Q9ERP3 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim54Q9ERP3 Mgea5-201ENSMUST00000026243 5024 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim54Q9ERP3 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim54Q9ERP3 Golga7-202ENSMUST00000121783 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim54Q9ERP3 Gm14968-201ENSMUST00000155528 769 ntTSL 3 BASIC19.16■□□□□ 0.66
Trim54Q9ERP3 Gas5-203ENSMUST00000159119 665 ntTSL 5 BASIC19.16■□□□□ 0.66
Trim54Q9ERP3 Tcta-202ENSMUST00000192886 1094 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
Trim54Q9ERP3 Gm9694-201ENSMUST00000193347 1189 ntBASIC19.16■□□□□ 0.66
Trim54Q9ERP3 Metrn-201ENSMUST00000002344 987 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Trim54Q9ERP3 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim54Q9ERP3 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim54Q9ERP3 Cacna1a-202ENSMUST00000122053 7589 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim54Q9ERP3 Car2-201ENSMUST00000029078 1788 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim54Q9ERP3 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim54Q9ERP3 Txndc5-201ENSMUST00000035988 2843 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim54Q9ERP3 Cyp2r1-201ENSMUST00000032908 1627 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim54Q9ERP3 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Trim54Q9ERP3 Trim67-201ENSMUST00000041106 5694 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim54Q9ERP3 Fam229a-201ENSMUST00000106043 558 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim54Q9ERP3 Ptf1aos-201ENSMUST00000122978 916 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 30.8 ms