Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Pthlh-201ENSMUST00000052296 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Clp1Q99LI9 Faxc-201ENSMUST00000029908 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Clp1Q99LI9 Plac9a-201ENSMUST00000052286 1555 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Clp1Q99LI9 Gm16054-201ENSMUST00000139469 1819 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Clp1Q99LI9 Zdhhc13-201ENSMUST00000118927 2410 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Clp1Q99LI9 1700024G13Rik-201ENSMUST00000100723 850 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Clp1Q99LI9 Il3ra-202ENSMUST00000223589 738 ntBASIC18.77■□□□□ 0.6
Clp1Q99LI9 Ephx4-201ENSMUST00000049146 1279 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
Clp1Q99LI9 Sapcd2-202ENSMUST00000100323 1761 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
Clp1Q99LI9 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Clp1Q99LI9 Plekhh1-201ENSMUST00000039928 6439 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Clp1Q99LI9 Lgmn-201ENSMUST00000021607 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Clp1Q99LI9 Atxn7l2-202ENSMUST00000117409 2321 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.59
Clp1Q99LI9 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Clp1Q99LI9 4430402I18Rik-205ENSMUST00000162110 1559 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
Clp1Q99LI9 Fam166b-201ENSMUST00000052829 1349 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Clp1Q99LI9 Gsg1-201ENSMUST00000087729 1307 ntAPPRIS P4 TSL 1 (best) BASIC18.76■□□□□ 0.59
Clp1Q99LI9 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Clp1Q99LI9 Gm28033-201ENSMUST00000184224 96 ntBASIC18.76■□□□□ 0.59
Clp1Q99LI9 Pagr1a-203ENSMUST00000206416 558 ntTSL 3 BASIC18.76■□□□□ 0.59
Clp1Q99LI9 Pigf-201ENSMUST00000024957 988 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Clp1Q99LI9 Olfr317-201ENSMUST00000075607 1128 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
Clp1Q99LI9 Taar2-201ENSMUST00000079134 1020 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Clp1Q99LI9 Lhx8-205ENSMUST00000205251 1729 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
Clp1Q99LI9 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Clp1Q99LI9 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Clp1Q99LI9 Ddost-201ENSMUST00000030538 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Clp1Q99LI9 Renbp-202ENSMUST00000116578 1418 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Clp1Q99LI9 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Clp1Q99LI9 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Clp1Q99LI9 Larp1b-206ENSMUST00000191872 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Clp1Q99LI9 Hras-201ENSMUST00000026572 2828 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Clp1Q99LI9 Phldb3-201ENSMUST00000073325 2273 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Clp1Q99LI9 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
Clp1Q99LI9 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Clp1Q99LI9 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Clp1Q99LI9 Blvrb-204ENSMUST00000133750 509 ntTSL 2 BASIC18.75■□□□□ 0.59
Clp1Q99LI9 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
Clp1Q99LI9 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
Clp1Q99LI9 Fcgrt-201ENSMUST00000003512 1770 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Clp1Q99LI9 Ghitm-201ENSMUST00000042564 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Clp1Q99LI9 Rab1b-201ENSMUST00000025804 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Clp1Q99LI9 Btnl9-202ENSMUST00000066531 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Clp1Q99LI9 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Clp1Q99LI9 Qsox2-201ENSMUST00000036187 2559 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
Clp1Q99LI9 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Clp1Q99LI9 Tra2a-204ENSMUST00000204189 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Clp1Q99LI9 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Clp1Q99LI9 Hmces-202ENSMUST00000113606 1572 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Clp1Q99LI9 Gzmm-201ENSMUST00000020549 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Clp1Q99LI9 Gm9731-201ENSMUST00000209480 747 ntBASIC18.74■□□□□ 0.59
Clp1Q99LI9 Nt5c1a-201ENSMUST00000068262 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Clp1Q99LI9 Gpr180-201ENSMUST00000022728 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Clp1Q99LI9 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Clp1Q99LI9 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Clp1Q99LI9 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Clp1Q99LI9 Hsf1-204ENSMUST00000226872 2104 ntBASIC18.73■□□□□ 0.59
Clp1Q99LI9 Plpbp-202ENSMUST00000098851 1368 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Clp1Q99LI9 Sap18-202ENSMUST00000111268 662 ntTSL 2 BASIC18.73■□□□□ 0.59
Clp1Q99LI9 9130019P16Rik-201ENSMUST00000135612 1019 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Clp1Q99LI9 Gm13025-201ENSMUST00000141469 1163 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Clp1Q99LI9 4930505N22Rik-201ENSMUST00000181820 945 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Clp1Q99LI9 Gm17807-201ENSMUST00000186869 298 ntBASIC18.73■□□□□ 0.59
Clp1Q99LI9 Gm7213-201ENSMUST00000215977 950 ntBASIC18.73■□□□□ 0.59
Clp1Q99LI9 Mrpl14-201ENSMUST00000024734 645 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Clp1Q99LI9 Cmtm7-202ENSMUST00000084867 874 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Clp1Q99LI9 Socs2-213ENSMUST00000170690 2195 ntAPPRIS P1 TSL 3 BASIC18.73■□□□□ 0.59
Clp1Q99LI9 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
Clp1Q99LI9 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Clp1Q99LI9 Ccnd3-215ENSMUST00000183044 2064 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Clp1Q99LI9 Ppp6r2-202ENSMUST00000226221 2559 ntBASIC18.72■□□□□ 0.59
Clp1Q99LI9 C030037D09Rik-202ENSMUST00000136201 1216 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Clp1Q99LI9 Gm17808-201ENSMUST00000200859 894 ntBASIC18.72■□□□□ 0.59
Clp1Q99LI9 Gm43791-201ENSMUST00000202914 468 ntTSL 5 BASIC18.72■□□□□ 0.59
Clp1Q99LI9 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Clp1Q99LI9 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Clp1Q99LI9 Prss53-202ENSMUST00000205300 1662 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Clp1Q99LI9 Schip1-203ENSMUST00000170788 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Clp1Q99LI9 Cct4-201ENSMUST00000020562 1634 ntTSL 5 BASIC18.71■□□□□ 0.59
Clp1Q99LI9 Ppp1r2-202ENSMUST00000115233 958 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Clp1Q99LI9 Atp6v0b-208ENSMUST00000150204 935 ntTSL 5 BASIC18.71■□□□□ 0.59
Clp1Q99LI9 Gm37025-201ENSMUST00000195159 829 ntBASIC18.71■□□□□ 0.59
Clp1Q99LI9 Snhg10-202ENSMUST00000222812 527 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Clp1Q99LI9 Gmnn-201ENSMUST00000006898 1127 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Clp1Q99LI9 Ube2d1-201ENSMUST00000020085 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Clp1Q99LI9 BC021767-201ENSMUST00000126387 1716 ntBASIC18.71■□□□□ 0.59
Clp1Q99LI9 Podxl2-202ENSMUST00000061262 2195 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
Clp1Q99LI9 Mrpl37-201ENSMUST00000030365 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Clp1Q99LI9 Kdm1a-203ENSMUST00000116273 3008 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
Clp1Q99LI9 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC18.71■□□□□ 0.58
Clp1Q99LI9 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
Clp1Q99LI9 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Clp1Q99LI9 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Clp1Q99LI9 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Clp1Q99LI9 Krt86-201ENSMUST00000088049 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Clp1Q99LI9 Cbfb-204ENSMUST00000109395 2709 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Clp1Q99LI9 Gm15582-201ENSMUST00000132849 1581 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Clp1Q99LI9 AC123857.1-201ENSMUST00000181053 2312 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Clp1Q99LI9 Gm29791-202ENSMUST00000207888 369 ntBASIC18.7■□□□□ 0.58
Clp1Q99LI9 Gm18669-201ENSMUST00000216049 778 ntBASIC18.7■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 22.7 ms