Protein–RNA interactions for Protein: Q99LC2

Cstf1, Cleavage stimulation factor subunit 1, mousemouse

Known RBP Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cstf1Q99LC2 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Cstf1Q99LC2 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Cstf1Q99LC2 Pld6-202ENSMUST00000125307 948 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Cstf1Q99LC2 Ikzf5-203ENSMUST00000128432 714 ntTSL 3 BASIC17.7■□□□□ 0.42
Cstf1Q99LC2 C030037D09Rik-202ENSMUST00000136201 1216 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Cstf1Q99LC2 B230208B08Rik-201ENSMUST00000173049 404 ntTSL 3 BASIC17.7■□□□□ 0.42
Cstf1Q99LC2 Prr3-209ENSMUST00000174849 581 ntTSL 2 BASIC17.7■□□□□ 0.42
Cstf1Q99LC2 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Cstf1Q99LC2 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Cstf1Q99LC2 AC126028.2-201ENSMUST00000228100 1833 ntBASIC17.7■□□□□ 0.42
Cstf1Q99LC2 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Cstf1Q99LC2 Sox12-201ENSMUST00000063332 4169 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
Cstf1Q99LC2 Ppp1cb-201ENSMUST00000015100 5962 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Cstf1Q99LC2 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
Cstf1Q99LC2 Espn-209ENSMUST00000105655 1350 ntTSL 5 BASIC17.69■□□□□ 0.42
Cstf1Q99LC2 Rfx7-201ENSMUST00000093820 7988 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
Cstf1Q99LC2 Syde1-201ENSMUST00000040580 3288 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Cstf1Q99LC2 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Cstf1Q99LC2 Zfas1-205ENSMUST00000189909 738 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Cstf1Q99LC2 Hoxa6-201ENSMUST00000062829 874 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Cstf1Q99LC2 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Cstf1Q99LC2 Fam181a-201ENSMUST00000179363 1406 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
Cstf1Q99LC2 Fam181a-203ENSMUST00000191218 1419 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
Cstf1Q99LC2 Dap3-201ENSMUST00000090938 4760 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Cstf1Q99LC2 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Cstf1Q99LC2 Bdkrb1-202ENSMUST00000182899 1313 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
Cstf1Q99LC2 Bdkrb1-201ENSMUST00000041229 1338 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
Cstf1Q99LC2 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Cstf1Q99LC2 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Cstf1Q99LC2 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Cstf1Q99LC2 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC17.68■□□□□ 0.42
Cstf1Q99LC2 Tril-201ENSMUST00000127748 5363 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
Cstf1Q99LC2 Dab2-208ENSMUST00000160134 1374 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
Cstf1Q99LC2 Ogg1-201ENSMUST00000032406 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Cstf1Q99LC2 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
Cstf1Q99LC2 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC17.68■□□□□ 0.42
Cstf1Q99LC2 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Cstf1Q99LC2 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC17.68■□□□□ 0.42
Cstf1Q99LC2 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Cstf1Q99LC2 Gm13420-201ENSMUST00000129574 1091 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
Cstf1Q99LC2 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Cstf1Q99LC2 Gm14114-201ENSMUST00000139345 287 ntTSL 3 BASIC17.68■□□□□ 0.42
Cstf1Q99LC2 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC17.68■□□□□ 0.42
Cstf1Q99LC2 2310001K24Rik-202ENSMUST00000186760 740 ntTSL 2 BASIC17.68■□□□□ 0.42
Cstf1Q99LC2 Ndufs7-201ENSMUST00000020361 758 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Cstf1Q99LC2 Rae1-201ENSMUST00000029013 1742 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Cstf1Q99LC2 Alkbh2-201ENSMUST00000053657 1073 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Cstf1Q99LC2 Mtnr1b-201ENSMUST00000057920 1095 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Cstf1Q99LC2 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
Cstf1Q99LC2 Nagk-203ENSMUST00000113851 1323 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Cstf1Q99LC2 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Cstf1Q99LC2 Gm44544-201ENSMUST00000207052 1844 ntBASIC17.68■□□□□ 0.42
Cstf1Q99LC2 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cstf1Q99LC2 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cstf1Q99LC2 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC17.67■□□□□ 0.42
Cstf1Q99LC2 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cstf1Q99LC2 Runx2-210ENSMUST00000162373 1565 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
Cstf1Q99LC2 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Cstf1Q99LC2 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cstf1Q99LC2 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cstf1Q99LC2 Fam131c-201ENSMUST00000006380 1433 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cstf1Q99LC2 Blvrb-204ENSMUST00000133750 509 ntTSL 2 BASIC17.67■□□□□ 0.42
Cstf1Q99LC2 1700022H01Rik-201ENSMUST00000219142 387 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Cstf1Q99LC2 Pldi-201ENSMUST00000036304 853 ntTSL 2 BASIC17.67■□□□□ 0.42
Cstf1Q99LC2 Cdkn2c-201ENSMUST00000063531 1106 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cstf1Q99LC2 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC17.67■□□□□ 0.42
Cstf1Q99LC2 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cstf1Q99LC2 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cstf1Q99LC2 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Cstf1Q99LC2 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC17.67■□□□□ 0.42
Cstf1Q99LC2 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
Cstf1Q99LC2 Chst3-202ENSMUST00000135158 6108 ntAPPRIS P2 TSL 5 BASIC17.66■□□□□ 0.42
Cstf1Q99LC2 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Cstf1Q99LC2 Fam149b-216ENSMUST00000225942 2151 ntAPPRIS ALT2 BASIC17.66■□□□□ 0.42
Cstf1Q99LC2 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
Cstf1Q99LC2 Sigmar1-201ENSMUST00000059354 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Cstf1Q99LC2 Gm17349-201ENSMUST00000163472 300 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
Cstf1Q99LC2 Calu-207ENSMUST00000173216 673 ntTSL 5 BASIC17.66■□□□□ 0.42
Cstf1Q99LC2 Gm28033-201ENSMUST00000184224 96 ntBASIC17.66■□□□□ 0.42
Cstf1Q99LC2 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Cstf1Q99LC2 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Cstf1Q99LC2 Galnt3-201ENSMUST00000028378 3885 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Cstf1Q99LC2 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Cstf1Q99LC2 Rogdi-207ENSMUST00000202281 1355 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Cstf1Q99LC2 Cep57-209ENSMUST00000148086 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Cstf1Q99LC2 Gtf3a-201ENSMUST00000132102 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Cstf1Q99LC2 Gapdh-202ENSMUST00000117757 1273 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Cstf1Q99LC2 Uqcc2-203ENSMUST00000119227 452 ntTSL 3 BASIC17.65■□□□□ 0.42
Cstf1Q99LC2 Flg-203ENSMUST00000178695 777 ntAPPRIS P5 BASIC17.65■□□□□ 0.42
Cstf1Q99LC2 Gm17807-201ENSMUST00000186869 298 ntBASIC17.65■□□□□ 0.42
Cstf1Q99LC2 Gm31727-201ENSMUST00000210102 360 ntTSL 3 BASIC17.65■□□□□ 0.42
Cstf1Q99LC2 Fthl17f-201ENSMUST00000097029 847 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
Cstf1Q99LC2 Rsu1-201ENSMUST00000028059 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Cstf1Q99LC2 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Cstf1Q99LC2 Fam159b-201ENSMUST00000043061 1310 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Cstf1Q99LC2 Aig1-205ENSMUST00000162610 1554 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Cstf1Q99LC2 Pdlim5-211ENSMUST00000198381 1555 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
Cstf1Q99LC2 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Cstf1Q99LC2 Asap2-202ENSMUST00000064595 5678 ntAPPRIS P4 TSL 5 BASIC17.64■□□□□ 0.41
Cstf1Q99LC2 Oxct2a-201ENSMUST00000102640 1760 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 29.2 ms