Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
Ushbp1Q8R370 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
Ushbp1Q8R370 Ubtf-204ENSMUST00000107117 3258 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.78
Ushbp1Q8R370 Ssc4d-204ENSMUST00000111153 2745 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
Ushbp1Q8R370 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Ushbp1Q8R370 Il17rb-201ENSMUST00000016110 2061 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Ushbp1Q8R370 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Ushbp1Q8R370 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Ushbp1Q8R370 Lgmn-201ENSMUST00000021607 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Ushbp1Q8R370 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Ushbp1Q8R370 Nr4a1-201ENSMUST00000023779 2474 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Ushbp1Q8R370 Nfu1-201ENSMUST00000032060 948 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
Ushbp1Q8R370 4732440D04Rik-203ENSMUST00000191825 5428 ntBASIC19.89■□□□□ 0.77
Ushbp1Q8R370 Ncoa5-203ENSMUST00000122070 3117 ntTSL 5 BASIC19.89■□□□□ 0.77
Ushbp1Q8R370 Paqr7-201ENSMUST00000081525 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Ushbp1Q8R370 2810004N23Rik-201ENSMUST00000034465 2340 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Ushbp1Q8R370 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Ushbp1Q8R370 Isca1-201ENSMUST00000057115 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Ushbp1Q8R370 Pon1-201ENSMUST00000002663 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Ushbp1Q8R370 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC19.88■□□□□ 0.77
Ushbp1Q8R370 Pigp-203ENSMUST00000113910 966 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Ushbp1Q8R370 Dnajc19-204ENSMUST00000120805 551 ntTSL 2 BASIC19.88■□□□□ 0.77
Ushbp1Q8R370 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Ushbp1Q8R370 Gm10698-201ENSMUST00000182663 604 ntBASIC19.88■□□□□ 0.77
Ushbp1Q8R370 Gm44549-201ENSMUST00000208351 577 ntBASIC19.88■□□□□ 0.77
Ushbp1Q8R370 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC19.88■□□□□ 0.77
Ushbp1Q8R370 AC153881.1-201ENSMUST00000214448 284 ntBASIC19.88■□□□□ 0.77
Ushbp1Q8R370 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Ushbp1Q8R370 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC19.88■□□□□ 0.77
Ushbp1Q8R370 Nrxn2-203ENSMUST00000113459 3285 ntTSL 2 BASIC19.88■□□□□ 0.77
Ushbp1Q8R370 Sox12-201ENSMUST00000063332 4169 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
Ushbp1Q8R370 Wnk2-201ENSMUST00000035538 6630 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Ushbp1Q8R370 Tle4-202ENSMUST00000167776 4545 ntAPPRIS ALT1 TSL 5 BASIC19.88■□□□□ 0.77
Ushbp1Q8R370 Dhh-201ENSMUST00000023737 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Ushbp1Q8R370 Tnrc18-201ENSMUST00000151477 6487 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Ushbp1Q8R370 Nrn1-203ENSMUST00000223611 1443 ntBASIC19.87■□□□□ 0.77
Ushbp1Q8R370 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
Ushbp1Q8R370 Gm45606-201ENSMUST00000209836 2795 ntBASIC19.87■□□□□ 0.77
Ushbp1Q8R370 Nectin2-202ENSMUST00000108450 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Ushbp1Q8R370 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Ushbp1Q8R370 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
Ushbp1Q8R370 Gm18666-201ENSMUST00000190039 958 ntBASIC19.87■□□□□ 0.77
Ushbp1Q8R370 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Ushbp1Q8R370 D930007J09Rik-201ENSMUST00000057911 393 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
Ushbp1Q8R370 Prrg2-201ENSMUST00000007981 1295 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Ushbp1Q8R370 Dlgap2-203ENSMUST00000133298 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Ushbp1Q8R370 Rrp9-201ENSMUST00000047721 1586 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Ushbp1Q8R370 Tulp1-201ENSMUST00000041819 2017 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Ushbp1Q8R370 Hs6st1-201ENSMUST00000088174 3719 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Ushbp1Q8R370 Tmed3-201ENSMUST00000058488 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Ushbp1Q8R370 Nptx1-201ENSMUST00000026670 5217 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Ushbp1Q8R370 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Ushbp1Q8R370 Gm2399-201ENSMUST00000104944 225 ntBASIC19.86■□□□□ 0.77
Ushbp1Q8R370 Tnnt2-202ENSMUST00000112085 1076 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
Ushbp1Q8R370 Tnnt2-203ENSMUST00000112086 1094 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
Ushbp1Q8R370 Tnnt2-204ENSMUST00000112087 1112 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
Ushbp1Q8R370 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC19.86■□□□□ 0.77
Ushbp1Q8R370 Gm20390-201ENSMUST00000170303 991 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
Ushbp1Q8R370 Tnnt2-206ENSMUST00000178854 1076 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
Ushbp1Q8R370 Tnnt2-211ENSMUST00000189355 1112 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
Ushbp1Q8R370 Tnnt2-212ENSMUST00000189732 1123 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
Ushbp1Q8R370 Galnt1-206ENSMUST00000170243 4108 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Ushbp1Q8R370 Agxt-201ENSMUST00000027491 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Ushbp1Q8R370 Krt77-201ENSMUST00000087996 2930 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Ushbp1Q8R370 Mef2d-202ENSMUST00000107558 1767 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Ushbp1Q8R370 Anks6-202ENSMUST00000107747 3980 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Ushbp1Q8R370 Gm21596-201ENSMUST00000178049 1316 ntBASIC19.85■□□□□ 0.77
Ushbp1Q8R370 Snca-201ENSMUST00000114268 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Ushbp1Q8R370 2900072N19Rik-201ENSMUST00000123840 806 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Ushbp1Q8R370 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Ushbp1Q8R370 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Ushbp1Q8R370 Gm38285-201ENSMUST00000192928 922 ntBASIC19.85■□□□□ 0.77
Ushbp1Q8R370 Eif6-201ENSMUST00000029142 1500 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Ushbp1Q8R370 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Ushbp1Q8R370 Acvr2b-205ENSMUST00000215746 3175 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Ushbp1Q8R370 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Ushbp1Q8R370 Acp5-204ENSMUST00000213815 1419 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
Ushbp1Q8R370 Acp5-206ENSMUST00000217643 1447 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
Ushbp1Q8R370 Shq1-204ENSMUST00000170667 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Ushbp1Q8R370 Gm45736-201ENSMUST00000210592 1352 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
Ushbp1Q8R370 Bcl9l-206ENSMUST00000220303 5760 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Ushbp1Q8R370 Lrg1-201ENSMUST00000041357 1351 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Ushbp1Q8R370 Ubald1-201ENSMUST00000037843 1851 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Ushbp1Q8R370 Hmga1-202ENSMUST00000117254 1328 ntAPPRIS P3 TSL 2 BASIC19.84■□□□□ 0.77
Ushbp1Q8R370 Gm37811-201ENSMUST00000192416 2601 ntBASIC19.84■□□□□ 0.77
Ushbp1Q8R370 Gpr84-201ENSMUST00000079824 1550 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Ushbp1Q8R370 Agfg2-201ENSMUST00000031736 2893 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
Ushbp1Q8R370 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Ushbp1Q8R370 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
Ushbp1Q8R370 Rbm24-201ENSMUST00000037923 3086 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
Ushbp1Q8R370 Gm11527-201ENSMUST00000153795 596 ntTSL 2 BASIC19.84■□□□□ 0.77
Ushbp1Q8R370 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Ushbp1Q8R370 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Ushbp1Q8R370 Zfp768-201ENSMUST00000060783 2356 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Ushbp1Q8R370 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
Ushbp1Q8R370 Pacsin3-215ENSMUST00000168916 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Ushbp1Q8R370 Pacsin3-201ENSMUST00000028694 1862 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Ushbp1Q8R370 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
Ushbp1Q8R370 Chst8-203ENSMUST00000154629 2079 ntTSL 5 BASIC19.83■□□□□ 0.77
Ushbp1Q8R370 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Retrieved 100 of 76,532 protein–RNA pairs in 11.8 ms