Protein–RNA interactions for Protein: Q8C0D0

Trub1, Probable tRNA pseudouridine synthase 1, mousemouse

Known RBP Predictions only

Length 338 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trub1Q8C0D0 Ocel1-202ENSMUST00000110051 2179 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Trub1Q8C0D0 Actr3-201ENSMUST00000027579 2554 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
Trub1Q8C0D0 Nudt17-204ENSMUST00000200387 2108 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Trub1Q8C0D0 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trub1Q8C0D0 Tspan10-201ENSMUST00000044105 1680 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trub1Q8C0D0 Nkiras2-201ENSMUST00000017981 2097 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trub1Q8C0D0 Meg3-201ENSMUST00000124106 1988 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Trub1Q8C0D0 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC18.33■□□□□ 0.52
Trub1Q8C0D0 Slc30a5-205ENSMUST00000225922 2722 ntAPPRIS ALT2 BASIC18.33■□□□□ 0.52
Trub1Q8C0D0 Slc30a9-204ENSMUST00000162372 5711 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trub1Q8C0D0 Gm37194-201ENSMUST00000193092 3031 ntBASIC18.33■□□□□ 0.52
Trub1Q8C0D0 Nespas-203ENSMUST00000151472 2248 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Trub1Q8C0D0 Cdc123-201ENSMUST00000043864 1827 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trub1Q8C0D0 Gm43702-201ENSMUST00000198772 2546 ntBASIC18.32■□□□□ 0.52
Trub1Q8C0D0 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC18.32■□□□□ 0.52
Trub1Q8C0D0 Tmem81-201ENSMUST00000058167 1742 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trub1Q8C0D0 Lat2-202ENSMUST00000077636 1717 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Trub1Q8C0D0 Acbd4-203ENSMUST00000107040 1959 ntTSL 2 BASIC18.32■□□□□ 0.52
Trub1Q8C0D0 Nrxn2-204ENSMUST00000113461 5505 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
Trub1Q8C0D0 Olfr94-203ENSMUST00000222190 1611 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
Trub1Q8C0D0 Gm29791-202ENSMUST00000207888 369 ntBASIC18.32■□□□□ 0.52
Trub1Q8C0D0 Gm20049-201ENSMUST00000219950 730 ntBASIC18.32■□□□□ 0.52
Trub1Q8C0D0 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Trub1Q8C0D0 Gm37820-201ENSMUST00000194021 2147 ntBASIC18.32■□□□□ 0.52
Trub1Q8C0D0 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trub1Q8C0D0 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trub1Q8C0D0 Vhl-201ENSMUST00000035673 2792 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trub1Q8C0D0 Kmt5c-201ENSMUST00000098853 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trub1Q8C0D0 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trub1Q8C0D0 Gm21596-201ENSMUST00000178049 1316 ntBASIC18.31■□□□□ 0.52
Trub1Q8C0D0 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Trub1Q8C0D0 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trub1Q8C0D0 Nsg1-201ENSMUST00000031009 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trub1Q8C0D0 Sarnp-201ENSMUST00000105230 918 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trub1Q8C0D0 Snx3-202ENSMUST00000105499 1057 ntTSL 5 BASIC18.31■□□□□ 0.52
Trub1Q8C0D0 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC18.31■□□□□ 0.52
Trub1Q8C0D0 3110082J24Rik-201ENSMUST00000127749 327 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Trub1Q8C0D0 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Trub1Q8C0D0 Gm46218-201ENSMUST00000215448 801 ntTSL 5 BASIC18.31■□□□□ 0.52
Trub1Q8C0D0 AC163280.1-201ENSMUST00000228194 1100 ntBASIC18.31■□□□□ 0.52
Trub1Q8C0D0 Park7-201ENSMUST00000030805 908 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trub1Q8C0D0 Cnn2-201ENSMUST00000004784 2460 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trub1Q8C0D0 Smpdl3a-201ENSMUST00000020022 1961 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trub1Q8C0D0 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trub1Q8C0D0 Tmem198-202ENSMUST00000113575 2185 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trub1Q8C0D0 Ruvbl1-201ENSMUST00000032165 1675 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trub1Q8C0D0 Gm26884-201ENSMUST00000181207 3074 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Trub1Q8C0D0 Mipol1-201ENSMUST00000123498 2117 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Trub1Q8C0D0 Mff-202ENSMUST00000078332 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trub1Q8C0D0 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trub1Q8C0D0 Cyb5a-204ENSMUST00000160180 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trub1Q8C0D0 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trub1Q8C0D0 Taf6l-211ENSMUST00000177056 2006 ntTSL 5 BASIC18.3■□□□□ 0.52
Trub1Q8C0D0 Ctnnbip1-201ENSMUST00000030839 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trub1Q8C0D0 Matk-201ENSMUST00000105328 2228 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trub1Q8C0D0 Dcaf8-206ENSMUST00000192704 2859 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trub1Q8C0D0 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trub1Q8C0D0 Pitx2-207ENSMUST00000174661 1942 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trub1Q8C0D0 C2cd4c-202ENSMUST00000178228 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trub1Q8C0D0 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trub1Q8C0D0 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC18.3■□□□□ 0.52
Trub1Q8C0D0 AC167978.1-201ENSMUST00000182488 456 ntTSL 3 BASIC18.3■□□□□ 0.52
Trub1Q8C0D0 Gm27275-201ENSMUST00000184318 272 ntBASIC18.3■□□□□ 0.52
Trub1Q8C0D0 Nme4-201ENSMUST00000025007 912 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trub1Q8C0D0 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trub1Q8C0D0 Slc5a10-201ENSMUST00000051552 2261 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trub1Q8C0D0 Zfp644-204ENSMUST00000112696 5785 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Trub1Q8C0D0 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trub1Q8C0D0 Meox1-201ENSMUST00000057054 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trub1Q8C0D0 Hsf5-201ENSMUST00000093956 4158 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
Trub1Q8C0D0 Agfg2-202ENSMUST00000100544 2858 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trub1Q8C0D0 Shc3-201ENSMUST00000021898 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trub1Q8C0D0 Zfp119b-201ENSMUST00000056147 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trub1Q8C0D0 Gm26885-201ENSMUST00000181920 1688 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Trub1Q8C0D0 Gm29514-202ENSMUST00000186665 2214 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Trub1Q8C0D0 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Trub1Q8C0D0 Alkbh1-212ENSMUST00000185301 408 ntBASIC18.29■□□□□ 0.52
Trub1Q8C0D0 Gm29241-201ENSMUST00000189260 1096 ntBASIC18.29■□□□□ 0.52
Trub1Q8C0D0 Gm10138-203ENSMUST00000206952 366 ntBASIC18.29■□□□□ 0.52
Trub1Q8C0D0 Sept9-201ENSMUST00000019038 3784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trub1Q8C0D0 Antxr1-201ENSMUST00000042025 5253 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trub1Q8C0D0 Fam131a-202ENSMUST00000118919 2262 ntTSL 5 BASIC18.29■□□□□ 0.52
Trub1Q8C0D0 Slc35g2-201ENSMUST00000093792 1590 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
Trub1Q8C0D0 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trub1Q8C0D0 Ubtf-206ENSMUST00000107123 2759 ntAPPRIS P3 TSL 5 BASIC18.29■□□□□ 0.52
Trub1Q8C0D0 Bmt2-201ENSMUST00000045235 4143 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trub1Q8C0D0 Msl1-204ENSMUST00000107487 2836 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
Trub1Q8C0D0 Arf1-202ENSMUST00000163300 1991 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trub1Q8C0D0 Sdsl-201ENSMUST00000031594 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trub1Q8C0D0 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trub1Q8C0D0 Gm10418-201ENSMUST00000100943 576 ntBASIC18.28■□□□□ 0.52
Trub1Q8C0D0 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC18.28■□□□□ 0.52
Trub1Q8C0D0 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trub1Q8C0D0 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC18.28■□□□□ 0.52
Trub1Q8C0D0 Cox16-207ENSMUST00000169124 685 ntTSL 2 BASIC18.28■□□□□ 0.52
Trub1Q8C0D0 Spr-202ENSMUST00000174286 775 ntTSL 2 BASIC18.28■□□□□ 0.52
Trub1Q8C0D0 Ing1-207ENSMUST00000211007 2241 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Trub1Q8C0D0 Gm27029-202ENSMUST00000107259 1855 ntAPPRIS P5 TSL 5 BASIC18.28■□□□□ 0.52
Trub1Q8C0D0 Ttpal-202ENSMUST00000109408 1999 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trub1Q8C0D0 Acot1-201ENSMUST00000168120 2272 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 40.8 ms