Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 B4galt5-201ENSMUST00000109221 4210 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Hmgb4Q6P8W9 Clta-203ENSMUST00000107847 1121 ntTSL 5 BASIC18.58■□□□□ 0.56
Hmgb4Q6P8W9 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
Hmgb4Q6P8W9 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.56
Hmgb4Q6P8W9 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
Hmgb4Q6P8W9 Gm42545-201ENSMUST00000202755 922 ntBASIC18.58■□□□□ 0.56
Hmgb4Q6P8W9 Gm10138-203ENSMUST00000206952 366 ntBASIC18.58■□□□□ 0.56
Hmgb4Q6P8W9 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Hmgb4Q6P8W9 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Hmgb4Q6P8W9 Mboat1-201ENSMUST00000047311 2905 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Hmgb4Q6P8W9 Scrn2-201ENSMUST00000021249 1530 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Hmgb4Q6P8W9 Gm42900-201ENSMUST00000197184 2167 ntBASIC18.58■□□□□ 0.56
Hmgb4Q6P8W9 Cdkl3-206ENSMUST00000109079 2051 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
Hmgb4Q6P8W9 Cdkl3-208ENSMUST00000109081 2063 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
Hmgb4Q6P8W9 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC18.58■□□□□ 0.56
Hmgb4Q6P8W9 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC18.57■□□□□ 0.56
Hmgb4Q6P8W9 Tymp-201ENSMUST00000023285 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Hmgb4Q6P8W9 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Hmgb4Q6P8W9 Gm16759-201ENSMUST00000126238 1393 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Hmgb4Q6P8W9 Map7d2-203ENSMUST00000112471 3670 ntAPPRIS P3 TSL 5 BASIC18.57■□□□□ 0.56
Hmgb4Q6P8W9 Tial1-201ENSMUST00000033135 1580 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Hmgb4Q6P8W9 Naa10-205ENSMUST00000114390 797 ntTSL 5 BASIC18.57■□□□□ 0.56
Hmgb4Q6P8W9 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Hmgb4Q6P8W9 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
Hmgb4Q6P8W9 Fau-203ENSMUST00000179142 736 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Hmgb4Q6P8W9 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC18.57■□□□□ 0.56
Hmgb4Q6P8W9 Btg1-202ENSMUST00000218953 668 ntTSL 2 BASIC18.57■□□□□ 0.56
Hmgb4Q6P8W9 Gm9987-201ENSMUST00000069768 567 ntBASIC18.57■□□□□ 0.56
Hmgb4Q6P8W9 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Hmgb4Q6P8W9 Ccdc91-201ENSMUST00000032441 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Hmgb4Q6P8W9 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Hmgb4Q6P8W9 Mdfic-202ENSMUST00000120512 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Hmgb4Q6P8W9 A330009N23Rik-201ENSMUST00000180639 1392 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Hmgb4Q6P8W9 Arrb2-204ENSMUST00000102564 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Hmgb4Q6P8W9 Rrp15-201ENSMUST00000001339 1321 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Hmgb4Q6P8W9 Slc25a10-201ENSMUST00000026899 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Hmgb4Q6P8W9 Slc30a5-205ENSMUST00000225922 2722 ntAPPRIS ALT2 BASIC18.56■□□□□ 0.56
Hmgb4Q6P8W9 Pno1-201ENSMUST00000020317 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Hmgb4Q6P8W9 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC18.56■□□□□ 0.56
Hmgb4Q6P8W9 AC175538.1-201ENSMUST00000225343 1269 ntBASIC18.56■□□□□ 0.56
Hmgb4Q6P8W9 AC130671.1-201ENSMUST00000227384 1237 ntBASIC18.56■□□□□ 0.56
Hmgb4Q6P8W9 Map4k5-203ENSMUST00000110570 4498 ntAPPRIS P5 TSL 5 BASIC18.56■□□□□ 0.56
Hmgb4Q6P8W9 Gm45560-201ENSMUST00000211492 1472 ntBASIC18.56■□□□□ 0.56
Hmgb4Q6P8W9 C2cd4c-202ENSMUST00000178228 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Hmgb4Q6P8W9 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Hmgb4Q6P8W9 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Hmgb4Q6P8W9 Gm15853-202ENSMUST00000195518 2041 ntBASIC18.56■□□□□ 0.56
Hmgb4Q6P8W9 Ndufa10-201ENSMUST00000027478 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Hmgb4Q6P8W9 Atp9a-203ENSMUST00000109176 3691 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Hmgb4Q6P8W9 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Hmgb4Q6P8W9 Acvr2b-205ENSMUST00000215746 3175 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Hmgb4Q6P8W9 B3gat2-202ENSMUST00000140583 1737 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Hmgb4Q6P8W9 1600012H06Rik-201ENSMUST00000052691 2506 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Hmgb4Q6P8W9 Antxr1-201ENSMUST00000042025 5253 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Hmgb4Q6P8W9 Rnf44-204ENSMUST00000125871 4292 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Hmgb4Q6P8W9 Aldh7a1-206ENSMUST00000172734 1880 ntTSL 5 BASIC18.55■□□□□ 0.56
Hmgb4Q6P8W9 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
Hmgb4Q6P8W9 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC18.55■□□□□ 0.56
Hmgb4Q6P8W9 Gm15375-201ENSMUST00000119510 849 ntBASIC18.55■□□□□ 0.56
Hmgb4Q6P8W9 Cox7a2l-202ENSMUST00000167741 1147 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Hmgb4Q6P8W9 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC18.55■□□□□ 0.56
Hmgb4Q6P8W9 Gm18025-201ENSMUST00000221733 862 ntBASIC18.55■□□□□ 0.56
Hmgb4Q6P8W9 Thap3-201ENSMUST00000036680 1124 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
Hmgb4Q6P8W9 Mfsd4a-203ENSMUST00000112370 2565 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Hmgb4Q6P8W9 Agap3-205ENSMUST00000199856 2685 ntTSL 5 BASIC18.55■□□□□ 0.56
Hmgb4Q6P8W9 Rasl10b-204ENSMUST00000175848 3249 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Hmgb4Q6P8W9 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Hmgb4Q6P8W9 Cers1-202ENSMUST00000140239 2711 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Hmgb4Q6P8W9 Cnpy1-201ENSMUST00000117098 2661 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Hmgb4Q6P8W9 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Hmgb4Q6P8W9 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Hmgb4Q6P8W9 Tlk2-201ENSMUST00000015107 3212 ntAPPRIS P3 TSL 5 BASIC18.54■□□□□ 0.56
Hmgb4Q6P8W9 Lsp1-204ENSMUST00000105967 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Hmgb4Q6P8W9 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Hmgb4Q6P8W9 Pon1-201ENSMUST00000002663 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Hmgb4Q6P8W9 Chka-201ENSMUST00000025760 2319 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
Hmgb4Q6P8W9 Agpat3-202ENSMUST00000105387 1316 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Hmgb4Q6P8W9 Ergic3-202ENSMUST00000088650 1349 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Hmgb4Q6P8W9 Snx15-201ENSMUST00000025702 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Hmgb4Q6P8W9 Slc47a2-201ENSMUST00000093029 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Hmgb4Q6P8W9 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
Hmgb4Q6P8W9 Gmcl1-201ENSMUST00000001185 2949 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Hmgb4Q6P8W9 Cacna1a-202ENSMUST00000122053 7589 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Hmgb4Q6P8W9 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
Hmgb4Q6P8W9 Gm28374-201ENSMUST00000162374 728 ntAPPRIS P1 TSL 3 BASIC18.53■□□□□ 0.56
Hmgb4Q6P8W9 Gm38285-201ENSMUST00000192928 922 ntBASIC18.53■□□□□ 0.56
Hmgb4Q6P8W9 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC18.53■□□□□ 0.56
Hmgb4Q6P8W9 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Hmgb4Q6P8W9 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Hmgb4Q6P8W9 Coro7-202ENSMUST00000090480 1147 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Hmgb4Q6P8W9 Ero1l-201ENSMUST00000022378 4418 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Hmgb4Q6P8W9 Lrrc14-204ENSMUST00000137649 2832 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Hmgb4Q6P8W9 Blcap-201ENSMUST00000088494 2108 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Hmgb4Q6P8W9 Samd8-201ENSMUST00000022292 1574 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Hmgb4Q6P8W9 Trim67-201ENSMUST00000041106 5694 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Hmgb4Q6P8W9 Fam222a-201ENSMUST00000043650 2930 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Hmgb4Q6P8W9 Leng1-201ENSMUST00000019878 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Hmgb4Q6P8W9 Pdxdc1-203ENSMUST00000115803 1268 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
Hmgb4Q6P8W9 Sct-202ENSMUST00000167790 507 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
Hmgb4Q6P8W9 Gm37805-201ENSMUST00000192612 1094 ntBASIC18.52■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 20 ms