Protein–RNA interactions for Protein: Q62233

Six3, Homeobox protein SIX3, mousemouse

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six3Q62233 Gm13148-201ENSMUST00000118892 745 ntBASIC17.35■□□□□ 0.37
Six3Q62233 Gm20390-201ENSMUST00000170303 991 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
Six3Q62233 AC133650.2-201ENSMUST00000217036 607 ntTSL 3 BASIC17.35■□□□□ 0.37
Six3Q62233 Prrg2-201ENSMUST00000007981 1295 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Six3Q62233 Hoxb4-201ENSMUST00000049241 2566 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Six3Q62233 Amigo2-201ENSMUST00000053106 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Six3Q62233 A230050P20Rik-201ENSMUST00000043911 1683 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Six3Q62233 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Six3Q62233 Fbrsl1-206ENSMUST00000198834 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Six3Q62233 Cdk19-201ENSMUST00000044672 5807 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Six3Q62233 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Six3Q62233 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC17.34■□□□□ 0.37
Six3Q62233 Acbd4-203ENSMUST00000107040 1959 ntTSL 2 BASIC17.34■□□□□ 0.37
Six3Q62233 Lpgat1-202ENSMUST00000110856 2792 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Six3Q62233 Tmem198-202ENSMUST00000113575 2185 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Six3Q62233 Cep57-208ENSMUST00000147115 2262 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Six3Q62233 Papola-203ENSMUST00000163473 2544 ntTSL 5 BASIC17.34■□□□□ 0.37
Six3Q62233 Pitx2-207ENSMUST00000174661 1942 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
Six3Q62233 Gm44899-202ENSMUST00000209433 511 ntTSL 5 BASIC17.34■□□□□ 0.37
Six3Q62233 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Six3Q62233 Tmem8-201ENSMUST00000025010 3464 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Six3Q62233 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
Six3Q62233 Abhd10-201ENSMUST00000066983 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Six3Q62233 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
Six3Q62233 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Six3Q62233 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
Six3Q62233 Hspbp1-201ENSMUST00000079970 1593 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Six3Q62233 Tor2a-201ENSMUST00000009707 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Six3Q62233 Uso1-204ENSMUST00000202155 3707 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Six3Q62233 Rtn4-204ENSMUST00000102842 2257 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Six3Q62233 Tacc3-203ENSMUST00000114426 2187 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
Six3Q62233 Kcnj4-201ENSMUST00000057801 2148 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Six3Q62233 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Six3Q62233 Ahcyl2-202ENSMUST00000102995 5155 ntAPPRIS ALT1 TSL 5 BASIC17.33■□□□□ 0.37
Six3Q62233 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC17.33■□□□□ 0.37
Six3Q62233 Hmg20b-201ENSMUST00000020454 1621 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Six3Q62233 Card10-203ENSMUST00000170584 3220 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
Six3Q62233 Krt19-201ENSMUST00000007317 1576 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Six3Q62233 Fjx1-201ENSMUST00000099678 3134 ntAPPRIS P1 BASIC17.33■□□□□ 0.37
Six3Q62233 Gm6598-201ENSMUST00000202719 2615 ntBASIC17.33■□□□□ 0.36
Six3Q62233 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Six3Q62233 Ssfa2-203ENSMUST00000111788 4976 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
Six3Q62233 Gm42417-201ENSMUST00000191849 2256 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Six3Q62233 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Six3Q62233 Icmt-201ENSMUST00000048892 4919 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Six3Q62233 Zfp804a-201ENSMUST00000047527 4620 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Six3Q62233 Lyl1-201ENSMUST00000037165 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Six3Q62233 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Six3Q62233 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC17.33■□□□□ 0.36
Six3Q62233 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Six3Q62233 Myb-201ENSMUST00000020158 3074 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Six3Q62233 Phtf1-203ENSMUST00000090685 3006 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Six3Q62233 Matk-201ENSMUST00000105328 2228 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Six3Q62233 Meox1-201ENSMUST00000057054 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Six3Q62233 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Six3Q62233 Ppp2r5d-201ENSMUST00000002839 2926 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Six3Q62233 Nudt17-204ENSMUST00000200387 2108 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Six3Q62233 Ecel1-201ENSMUST00000027463 2695 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Six3Q62233 Gm8773-201ENSMUST00000101627 1268 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Six3Q62233 Gm2399-201ENSMUST00000104944 225 ntBASIC17.32■□□□□ 0.36
Six3Q62233 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
Six3Q62233 Ube2b-202ENSMUST00000109086 585 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
Six3Q62233 Dnajc19-204ENSMUST00000120805 551 ntTSL 2 BASIC17.32■□□□□ 0.36
Six3Q62233 Gm27405-201ENSMUST00000184201 112 ntBASIC17.32■□□□□ 0.36
Six3Q62233 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Six3Q62233 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Six3Q62233 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
Six3Q62233 Pik3r2-201ENSMUST00000034296 3165 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Six3Q62233 Pi4k2b-201ENSMUST00000031081 3139 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Six3Q62233 Rmnd1-201ENSMUST00000042251 3139 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Six3Q62233 Isyna1-201ENSMUST00000019283 1836 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Six3Q62233 Adam15-203ENSMUST00000107446 1686 ntTSL 5 BASIC17.32■□□□□ 0.36
Six3Q62233 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Six3Q62233 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
Six3Q62233 Glrx2-210ENSMUST00000185362 3337 ntAPPRIS P4 TSL 1 (best) BASIC17.32■□□□□ 0.36
Six3Q62233 Ppp1cb-201ENSMUST00000015100 5962 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Six3Q62233 Rrp9-201ENSMUST00000047721 1586 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Six3Q62233 Camsap3-206ENSMUST00000207533 2584 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Six3Q62233 Tmed4-201ENSMUST00000004508 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Six3Q62233 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Six3Q62233 Myrip-201ENSMUST00000048121 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Six3Q62233 8030462N17Rik-201ENSMUST00000074653 3418 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Six3Q62233 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Six3Q62233 Aatk-203ENSMUST00000103020 5687 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
Six3Q62233 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Six3Q62233 Gm8969-201ENSMUST00000199694 526 ntBASIC17.31■□□□□ 0.36
Six3Q62233 Gm10153-202ENSMUST00000210290 963 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
Six3Q62233 Zfp324-204ENSMUST00000210619 447 ntTSL 3 BASIC17.31■□□□□ 0.36
Six3Q62233 Gm45890-202ENSMUST00000212188 1052 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Six3Q62233 Pts-208ENSMUST00000215416 439 ntTSL 2 BASIC17.31■□□□□ 0.36
Six3Q62233 Tceanc2-201ENSMUST00000030362 935 ntAPPRIS P1 TSL 3 BASIC17.31■□□□□ 0.36
Six3Q62233 Nfu1-201ENSMUST00000032060 948 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
Six3Q62233 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
Six3Q62233 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Six3Q62233 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Six3Q62233 Tcf7l2-203ENSMUST00000111646 2839 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Six3Q62233 Trim44-201ENSMUST00000102573 5612 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Six3Q62233 Prdm6-201ENSMUST00000091900 2601 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Six3Q62233 Tbx2-201ENSMUST00000000095 3626 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Six3Q62233 Scrib-202ENSMUST00000063747 5440 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 25.5 ms