Protein–RNA interactions for Protein: Q5I043

Usp28, Ubiquitin carboxyl-terminal hydrolase 28, mousemouse

Predictions only

Length 1,051 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp28Q5I043 Igsf23-201ENSMUST00000043440 1908 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Usp28Q5I043 Tspan10-201ENSMUST00000044105 1680 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Usp28Q5I043 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Usp28Q5I043 Acss2-201ENSMUST00000029135 2931 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Usp28Q5I043 Jph1-201ENSMUST00000038382 4809 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Usp28Q5I043 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Usp28Q5I043 Atp5d-203ENSMUST00000105367 1410 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
Usp28Q5I043 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Usp28Q5I043 Tmem80-201ENSMUST00000026578 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Usp28Q5I043 Gas2-201ENSMUST00000051912 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Usp28Q5I043 Sh3bp1-201ENSMUST00000001226 2510 ntTSL 5 BASIC20.18■□□□□ 0.82
Usp28Q5I043 Mtmr1-202ENSMUST00000114601 4640 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
Usp28Q5I043 Uri1-201ENSMUST00000085513 3441 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Usp28Q5I043 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Usp28Q5I043 Adamtsl5-202ENSMUST00000105352 989 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Usp28Q5I043 2700033N17Rik-201ENSMUST00000140185 721 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Usp28Q5I043 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Usp28Q5I043 Wnt10b-205ENSMUST00000226846 1204 ntBASIC20.18■□□□□ 0.82
Usp28Q5I043 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC20.18■□□□□ 0.82
Usp28Q5I043 Mpped2-202ENSMUST00000111063 2848 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Usp28Q5I043 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC20.18■□□□□ 0.82
Usp28Q5I043 Gm37820-201ENSMUST00000194021 2147 ntBASIC20.18■□□□□ 0.82
Usp28Q5I043 Cspg5-202ENSMUST00000196060 3790 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Usp28Q5I043 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Usp28Q5I043 Panx1-202ENSMUST00000164273 5732 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Usp28Q5I043 Sntg2-201ENSMUST00000021004 2411 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Usp28Q5I043 Impdh1-210ENSMUST00000162739 2471 ntTSL 5 BASIC20.17■□□□□ 0.82
Usp28Q5I043 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Usp28Q5I043 Gpat3-203ENSMUST00000112887 3059 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Usp28Q5I043 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
Usp28Q5I043 Fam129c-208ENSMUST00000143662 2267 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
Usp28Q5I043 Ikzf5-203ENSMUST00000128432 714 ntTSL 3 BASIC20.17■□□□□ 0.82
Usp28Q5I043 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
Usp28Q5I043 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
Usp28Q5I043 Ankle2-202ENSMUST00000086674 5025 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
Usp28Q5I043 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Usp28Q5I043 Tdh-201ENSMUST00000022522 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Usp28Q5I043 Ptpdc1-204ENSMUST00000222028 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Usp28Q5I043 Cyr61-201ENSMUST00000029846 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Usp28Q5I043 Gbe1-206ENSMUST00000170464 2736 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
Usp28Q5I043 Shc3-201ENSMUST00000021898 1537 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Usp28Q5I043 Mapkapk3-201ENSMUST00000035194 2816 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Usp28Q5I043 Cyp2r1-201ENSMUST00000032908 1627 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Usp28Q5I043 Map3k10-201ENSMUST00000036453 3682 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Usp28Q5I043 P2rx5-201ENSMUST00000006104 2395 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Usp28Q5I043 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Usp28Q5I043 Ero1l-201ENSMUST00000022378 4418 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Usp28Q5I043 Dcaf12l2-201ENSMUST00000115057 2885 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
Usp28Q5I043 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Usp28Q5I043 Ube2b-202ENSMUST00000109086 585 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
Usp28Q5I043 Hsp25-ps1-201ENSMUST00000109187 630 ntBASIC20.16■□□□□ 0.82
Usp28Q5I043 Stx6-209ENSMUST00000195302 955 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Usp28Q5I043 Gm44549-201ENSMUST00000208351 577 ntBASIC20.16■□□□□ 0.82
Usp28Q5I043 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Usp28Q5I043 Nfib-204ENSMUST00000107246 3075 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Usp28Q5I043 Pacsin3-215ENSMUST00000168916 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Usp28Q5I043 Pacsin3-201ENSMUST00000028694 1862 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Usp28Q5I043 Lrrfip2-202ENSMUST00000098340 3191 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Usp28Q5I043 Akt2-205ENSMUST00000108344 4544 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Usp28Q5I043 Ift74-201ENSMUST00000030311 2139 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
Usp28Q5I043 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Usp28Q5I043 Cyp4f14-202ENSMUST00000179434 2207 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
Usp28Q5I043 Cyp4f14-201ENSMUST00000054174 2207 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Usp28Q5I043 Enah-205ENSMUST00000177811 4231 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
Usp28Q5I043 Meis2-202ENSMUST00000074285 2844 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Usp28Q5I043 Slc26a10-205ENSMUST00000222911 3067 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
Usp28Q5I043 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC20.15■□□□□ 0.82
Usp28Q5I043 Zfp783-201ENSMUST00000095946 670 ntBASIC20.15■□□□□ 0.82
Usp28Q5I043 Adsl-204ENSMUST00000164806 1595 ntTSL 5 BASIC20.15■□□□□ 0.82
Usp28Q5I043 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Usp28Q5I043 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Usp28Q5I043 Bpifb4-203ENSMUST00000109759 2115 ntAPPRIS P2 TSL 5 BASIC20.15■□□□□ 0.82
Usp28Q5I043 Senp3-202ENSMUST00000066760 2219 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Usp28Q5I043 Gm7292-201ENSMUST00000194706 2527 ntBASIC20.15■□□□□ 0.82
Usp28Q5I043 Cacfd1-205ENSMUST00000114007 2689 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Usp28Q5I043 Raver2-201ENSMUST00000038463 4045 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Usp28Q5I043 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.82
Usp28Q5I043 Btbd10-203ENSMUST00000119278 2394 ntTSL 5 BASIC20.14■□□□□ 0.82
Usp28Q5I043 B3galnt2-204ENSMUST00000221300 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
Usp28Q5I043 Zdhhc16-201ENSMUST00000026154 1821 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Usp28Q5I043 Pced1a-202ENSMUST00000110277 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Usp28Q5I043 Zdhhc12-202ENSMUST00000102865 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Usp28Q5I043 Gm10153-202ENSMUST00000210290 963 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
Usp28Q5I043 Jkamp-201ENSMUST00000057257 1292 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
Usp28Q5I043 Fam171a2-201ENSMUST00000049057 3118 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Usp28Q5I043 Msx2-201ENSMUST00000021922 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Usp28Q5I043 Agfg1-205ENSMUST00000187899 2078 ntTSL 5 BASIC20.14■□□□□ 0.81
Usp28Q5I043 Tbx2-201ENSMUST00000000095 3626 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Usp28Q5I043 Txnl1-201ENSMUST00000025476 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Usp28Q5I043 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Usp28Q5I043 Dleu2-208ENSMUST00000182768 1442 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Usp28Q5I043 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC20.13■□□□□ 0.81
Usp28Q5I043 A430057M04Rik-202ENSMUST00000170150 2176 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Usp28Q5I043 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC20.13■□□□□ 0.81
Usp28Q5I043 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC20.13■□□□□ 0.81
Usp28Q5I043 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC20.13■□□□□ 0.81
Usp28Q5I043 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC20.13■□□□□ 0.81
Usp28Q5I043 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC20.13■□□□□ 0.81
Usp28Q5I043 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
Usp28Q5I043 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 27.7 ms