Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Oxct2b-201ENSMUST00000102648 1735 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
Limch1Q3UH68 Mthfsl-201ENSMUST00000113110 801 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Limch1Q3UH68 Mthfs-203ENSMUST00000118870 705 ntTSL 3 BASIC20.88■□□□□ 0.93
Limch1Q3UH68 Tex30-204ENSMUST00000128190 1275 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Limch1Q3UH68 Gm6576-201ENSMUST00000169678 883 ntBASIC20.88■□□□□ 0.93
Limch1Q3UH68 Gm2479-201ENSMUST00000173312 1053 ntTSL 3 BASIC20.88■□□□□ 0.93
Limch1Q3UH68 Gm44549-201ENSMUST00000208351 577 ntBASIC20.88■□□□□ 0.93
Limch1Q3UH68 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC20.88■□□□□ 0.93
Limch1Q3UH68 Mthfs-201ENSMUST00000085256 816 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Limch1Q3UH68 Krt77-201ENSMUST00000087996 2930 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Limch1Q3UH68 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Limch1Q3UH68 Paqr7-201ENSMUST00000081525 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Limch1Q3UH68 Plekhf2-201ENSMUST00000054776 2977 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Limch1Q3UH68 Klk9-201ENSMUST00000005891 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Limch1Q3UH68 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Limch1Q3UH68 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Limch1Q3UH68 Commd7-202ENSMUST00000109782 1343 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Limch1Q3UH68 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC20.87■□□□□ 0.93
Limch1Q3UH68 Arhgef33-211ENSMUST00000225658 473 ntBASIC20.87■□□□□ 0.93
Limch1Q3UH68 Aebp2-202ENSMUST00000087614 3727 ntAPPRIS P4 TSL 1 (best) BASIC20.87■□□□□ 0.93
Limch1Q3UH68 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Limch1Q3UH68 Rassf7-201ENSMUST00000046890 1525 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Limch1Q3UH68 Iscu-202ENSMUST00000112311 1395 ntTSL 2 BASIC20.86■□□□□ 0.93
Limch1Q3UH68 Aqp5-201ENSMUST00000088200 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Limch1Q3UH68 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
Limch1Q3UH68 Tbc1d2b-202ENSMUST00000128874 3473 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Limch1Q3UH68 Zfp768-201ENSMUST00000060783 2356 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Limch1Q3UH68 Gm20390-201ENSMUST00000170303 991 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
Limch1Q3UH68 Aprt-204ENSMUST00000212093 723 ntTSL 2 BASIC20.86■□□□□ 0.93
Limch1Q3UH68 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC20.86■□□□□ 0.93
Limch1Q3UH68 Smpdl3a-201ENSMUST00000020022 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Limch1Q3UH68 Lgmn-201ENSMUST00000021607 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Limch1Q3UH68 Six3-203ENSMUST00000176081 3680 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Limch1Q3UH68 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC20.86■□□□□ 0.93
Limch1Q3UH68 Klf16-201ENSMUST00000038558 2674 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Limch1Q3UH68 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Limch1Q3UH68 Ergic3-201ENSMUST00000006035 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Limch1Q3UH68 Atxn7-203ENSMUST00000223880 2946 ntAPPRIS P2 BASIC20.85■□□□□ 0.93
Limch1Q3UH68 Ddx59-201ENSMUST00000027655 2166 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Limch1Q3UH68 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
Limch1Q3UH68 Selenos-201ENSMUST00000101801 1191 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Limch1Q3UH68 Alad-202ENSMUST00000107444 1247 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Limch1Q3UH68 Ccnd2-202ENSMUST00000201066 983 ntTSL 2 BASIC20.85■□□□□ 0.93
Limch1Q3UH68 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Limch1Q3UH68 Rtcb-201ENSMUST00000001834 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Limch1Q3UH68 Fam109a-201ENSMUST00000056654 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Limch1Q3UH68 Nectin2-202ENSMUST00000108450 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Limch1Q3UH68 Slc9a5-201ENSMUST00000073149 3499 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Limch1Q3UH68 Mboat4-201ENSMUST00000095345 1836 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Limch1Q3UH68 Rpl36al-202ENSMUST00000110619 1276 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
Limch1Q3UH68 Snca-201ENSMUST00000114268 1280 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Limch1Q3UH68 Gm11249-201ENSMUST00000117071 859 ntBASIC20.84■□□□□ 0.93
Limch1Q3UH68 Gm13647-201ENSMUST00000154654 622 ntTSL 5 BASIC20.84■□□□□ 0.93
Limch1Q3UH68 Gm44899-201ENSMUST00000207451 391 ntTSL 3 BASIC20.84■□□□□ 0.93
Limch1Q3UH68 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Limch1Q3UH68 Etnk1-204ENSMUST00000205256 2647 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Limch1Q3UH68 Ncoa5-203ENSMUST00000122070 3117 ntTSL 5 BASIC20.84■□□□□ 0.93
Limch1Q3UH68 Hnrnpul2-201ENSMUST00000096753 5726 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Limch1Q3UH68 Tor2a-201ENSMUST00000009707 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Limch1Q3UH68 1700018L02Rik-201ENSMUST00000187897 2485 ntBASIC20.83■□□□□ 0.93
Limch1Q3UH68 Shq1-204ENSMUST00000170667 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Limch1Q3UH68 Isca1-201ENSMUST00000057115 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Limch1Q3UH68 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Limch1Q3UH68 Gm1673-203ENSMUST00000114383 511 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
Limch1Q3UH68 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Limch1Q3UH68 Crybb1-201ENSMUST00000031286 882 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Limch1Q3UH68 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Limch1Q3UH68 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Limch1Q3UH68 Ero1l-201ENSMUST00000022378 4418 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Limch1Q3UH68 Dennd6a-201ENSMUST00000037585 6638 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Limch1Q3UH68 Chst8-203ENSMUST00000154629 2079 ntTSL 5 BASIC20.82■□□□□ 0.92
Limch1Q3UH68 Mef2d-202ENSMUST00000107558 1767 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Limch1Q3UH68 Gm21596-201ENSMUST00000178049 1316 ntBASIC20.82■□□□□ 0.92
Limch1Q3UH68 Clasp2-204ENSMUST00000213663 2727 ntTSL 5 BASIC20.82■□□□□ 0.92
Limch1Q3UH68 Tmem79-201ENSMUST00000001456 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Limch1Q3UH68 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC20.82■□□□□ 0.92
Limch1Q3UH68 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC20.82■□□□□ 0.92
Limch1Q3UH68 Tmem51os1-202ENSMUST00000141769 2131 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Limch1Q3UH68 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
Limch1Q3UH68 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC20.82■□□□□ 0.92
Limch1Q3UH68 Gm7977-201ENSMUST00000193787 748 ntBASIC20.82■□□□□ 0.92
Limch1Q3UH68 6530437J22Rik-201ENSMUST00000207515 773 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Limch1Q3UH68 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Limch1Q3UH68 Nfu1-201ENSMUST00000032060 948 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
Limch1Q3UH68 Cox8a-201ENSMUST00000039758 545 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Limch1Q3UH68 Pon1-201ENSMUST00000002663 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Limch1Q3UH68 Camta1-204ENSMUST00000105670 4961 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Limch1Q3UH68 Abr-202ENSMUST00000072740 5394 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
Limch1Q3UH68 Stx18-201ENSMUST00000031008 1471 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Limch1Q3UH68 Ubald1-201ENSMUST00000037843 1851 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Limch1Q3UH68 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Limch1Q3UH68 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Limch1Q3UH68 Hmga1-202ENSMUST00000117254 1328 ntAPPRIS P3 TSL 2 BASIC20.81■□□□□ 0.92
Limch1Q3UH68 Zcchc6-207ENSMUST00000225576 2499 ntBASIC20.81■□□□□ 0.92
Limch1Q3UH68 Gm19554-201ENSMUST00000220934 2076 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Limch1Q3UH68 Mxi1-201ENSMUST00000003870 5156 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Limch1Q3UH68 Fcho2-208ENSMUST00000224992 2964 ntBASIC20.81■□□□□ 0.92
Limch1Q3UH68 Speg-203ENSMUST00000113588 1078 ntTSL 5 BASIC20.81■□□□□ 0.92
Limch1Q3UH68 Gm18666-201ENSMUST00000190039 958 ntBASIC20.81■□□□□ 0.92
Limch1Q3UH68 D930007J09Rik-201ENSMUST00000057911 393 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
Retrieved 100 of 76,532 protein–RNA pairs in 24.4 ms