Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Tmem198-201ENSMUST00000050899 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Hmgb1P63158 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
Hmgb1P63158 Prss12-201ENSMUST00000029603 2602 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Hmgb1P63158 Ocel1-202ENSMUST00000110051 2179 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Hmgb1P63158 4930503L19Rik-201ENSMUST00000067556 2291 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Hmgb1P63158 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC19.52■□□□□ 0.72
Hmgb1P63158 Jkamp-201ENSMUST00000057257 1292 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
Hmgb1P63158 Lrrc14-204ENSMUST00000137649 2832 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Hmgb1P63158 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Hmgb1P63158 Ptprf-201ENSMUST00000049074 7656 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
Hmgb1P63158 Gm17484-201ENSMUST00000167899 2322 ntTSL 2 BASIC19.52■□□□□ 0.71
Hmgb1P63158 Stard3-201ENSMUST00000018311 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Hmgb1P63158 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Hmgb1P63158 Ubtf-206ENSMUST00000107123 2759 ntAPPRIS P3 TSL 5 BASIC19.51■□□□□ 0.71
Hmgb1P63158 C2cd4c-202ENSMUST00000178228 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Hmgb1P63158 Mipol1-201ENSMUST00000123498 2117 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
Hmgb1P63158 Nespas-203ENSMUST00000151472 2248 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Hmgb1P63158 Gm2399-201ENSMUST00000104944 225 ntBASIC19.51■□□□□ 0.71
Hmgb1P63158 Pitx2-207ENSMUST00000174661 1942 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
Hmgb1P63158 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Hmgb1P63158 C1qtnf12-201ENSMUST00000024338 1315 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Hmgb1P63158 Slc35g1-201ENSMUST00000054098 3471 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Hmgb1P63158 Rasgrp1-201ENSMUST00000102534 5229 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
Hmgb1P63158 Acot1-201ENSMUST00000168120 2272 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Hmgb1P63158 Slc16a3-201ENSMUST00000070653 2272 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Hmgb1P63158 Haglr-201ENSMUST00000100000 2085 ntBASIC19.5■□□□□ 0.71
Hmgb1P63158 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Hmgb1P63158 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC19.5■□□□□ 0.71
Hmgb1P63158 Ikzf5-203ENSMUST00000128432 714 ntTSL 3 BASIC19.5■□□□□ 0.71
Hmgb1P63158 Gm44899-202ENSMUST00000209433 511 ntTSL 5 BASIC19.5■□□□□ 0.71
Hmgb1P63158 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Hmgb1P63158 Ttc32-201ENSMUST00000085741 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Hmgb1P63158 Snx21-201ENSMUST00000056181 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Hmgb1P63158 Farsa-201ENSMUST00000003906 1826 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Hmgb1P63158 Polr3h-201ENSMUST00000023113 2514 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Hmgb1P63158 Hikeshi-206ENSMUST00000153470 2224 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Hmgb1P63158 Tigd3-201ENSMUST00000055911 2114 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Hmgb1P63158 Otud7a-201ENSMUST00000058476 3483 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Hmgb1P63158 Pdxdc1-202ENSMUST00000115802 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Hmgb1P63158 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Hmgb1P63158 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Hmgb1P63158 Gm44549-201ENSMUST00000208351 577 ntBASIC19.49■□□□□ 0.71
Hmgb1P63158 Hebp1-201ENSMUST00000045855 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Hmgb1P63158 Uhmk1-202ENSMUST00000123399 7775 ntTSL 5 BASIC19.49■□□□□ 0.71
Hmgb1P63158 Mtmr3-202ENSMUST00000109943 5674 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Hmgb1P63158 Ankrd22-201ENSMUST00000025686 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Hmgb1P63158 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC19.49■□□□□ 0.71
Hmgb1P63158 Gm37194-201ENSMUST00000193092 3031 ntBASIC19.49■□□□□ 0.71
Hmgb1P63158 Hspbp1-201ENSMUST00000079970 1593 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Hmgb1P63158 Ptges3-202ENSMUST00000084771 1559 ntTSL 5 BASIC19.49■□□□□ 0.71
Hmgb1P63158 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Hmgb1P63158 Arhgef19-201ENSMUST00000006618 3414 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Hmgb1P63158 Klk9-201ENSMUST00000005891 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Hmgb1P63158 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC19.48■□□□□ 0.71
Hmgb1P63158 Bend6-202ENSMUST00000115161 2231 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Hmgb1P63158 S1pr5-201ENSMUST00000122088 2500 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
Hmgb1P63158 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Hmgb1P63158 Tmem203-201ENSMUST00000104998 854 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
Hmgb1P63158 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC19.48■□□□□ 0.71
Hmgb1P63158 Prdm8-202ENSMUST00000210477 3316 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
Hmgb1P63158 4930426D05Rik-202ENSMUST00000139804 1650 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Hmgb1P63158 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Hmgb1P63158 Yipf2-201ENSMUST00000034700 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Hmgb1P63158 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
Hmgb1P63158 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Hmgb1P63158 Slc7a10-201ENSMUST00000001854 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Hmgb1P63158 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
Hmgb1P63158 Gnao1-207ENSMUST00000138659 5526 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Hmgb1P63158 4930413G21Rik-201ENSMUST00000205998 993 ntBASIC19.47■□□□□ 0.71
Hmgb1P63158 AC133650.2-201ENSMUST00000217036 607 ntTSL 3 BASIC19.47■□□□□ 0.71
Hmgb1P63158 Cox14-201ENSMUST00000023761 723 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Hmgb1P63158 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Hmgb1P63158 Zfp783-201ENSMUST00000095946 670 ntBASIC19.47■□□□□ 0.71
Hmgb1P63158 Asnsd1-201ENSMUST00000027264 2442 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Hmgb1P63158 Camsap3-212ENSMUST00000208240 2572 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Hmgb1P63158 H13-204ENSMUST00000125366 5204 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Hmgb1P63158 Ulk1-201ENSMUST00000031490 5213 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
Hmgb1P63158 Msl1-204ENSMUST00000107487 2836 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
Hmgb1P63158 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Hmgb1P63158 Cog2-201ENSMUST00000034460 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Hmgb1P63158 Nfib-206ENSMUST00000107248 3294 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Hmgb1P63158 Dcaf8-206ENSMUST00000192704 2859 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Hmgb1P63158 Kcnj4-201ENSMUST00000057801 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Hmgb1P63158 Meg3-201ENSMUST00000124106 1988 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Hmgb1P63158 Gm16712-201ENSMUST00000181962 1960 ntTSL 2 BASIC19.46■□□□□ 0.71
Hmgb1P63158 Arid1a-205ENSMUST00000145664 8187 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
Hmgb1P63158 Apbb1-219ENSMUST00000191601 2690 ntAPPRIS P4 TSL 5 BASIC19.46■□□□□ 0.71
Hmgb1P63158 Ctnnbip1-201ENSMUST00000030839 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Hmgb1P63158 Lancl2-202ENSMUST00000072954 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Hmgb1P63158 Zdhhc12-202ENSMUST00000102865 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Hmgb1P63158 2700033N17Rik-201ENSMUST00000140185 721 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Hmgb1P63158 Tspan2os-201ENSMUST00000146624 590 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Hmgb1P63158 Prrg2-201ENSMUST00000007981 1295 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Hmgb1P63158 Arl1-202ENSMUST00000116234 2080 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Hmgb1P63158 Ankib1-201ENSMUST00000043551 6426 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Hmgb1P63158 Mex3a-201ENSMUST00000172699 5778 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
Hmgb1P63158 Fst-201ENSMUST00000022287 2556 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Hmgb1P63158 Nxn-201ENSMUST00000021204 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Hmgb1P63158 Card10-202ENSMUST00000164826 4726 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Hmgb1P63158 Med9-201ENSMUST00000081980 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 25.7 ms