Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Capg-202ENSMUST00000114071 1400 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Sox3P53784 Slc35g1-201ENSMUST00000054098 3471 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Sox3P53784 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC16.97■□□□□ 0.31
Sox3P53784 Rbm11-202ENSMUST00000114249 2750 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
Sox3P53784 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Sox3P53784 Gm19439-201ENSMUST00000198195 2273 ntBASIC16.97■□□□□ 0.31
Sox3P53784 Keap1-206ENSMUST00000216436 2498 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
Sox3P53784 Map7d2-203ENSMUST00000112471 3670 ntAPPRIS P3 TSL 5 BASIC16.97■□□□□ 0.31
Sox3P53784 Mtrf1l-201ENSMUST00000019908 2588 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Sox3P53784 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
Sox3P53784 Crocc-211ENSMUST00000168157 6244 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Sox3P53784 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Sox3P53784 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Sox3P53784 Pacs2-207ENSMUST00000223502 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Sox3P53784 Whrn-205ENSMUST00000095038 2665 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Sox3P53784 Anks1b-208ENSMUST00000182053 1649 ntTSL 5 BASIC16.96■□□□□ 0.31
Sox3P53784 Nr1h2-202ENSMUST00000107910 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Sox3P53784 Leng1-201ENSMUST00000019878 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Sox3P53784 Ppp1cb-201ENSMUST00000015100 5962 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Sox3P53784 Bpnt1-202ENSMUST00000110965 1046 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Sox3P53784 Gm15847-201ENSMUST00000121417 1065 ntBASIC16.96■□□□□ 0.31
Sox3P53784 Gm16731-201ENSMUST00000132432 922 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Sox3P53784 Alkbh1-212ENSMUST00000185301 408 ntBASIC16.96■□□□□ 0.31
Sox3P53784 Lsm1-203ENSMUST00000211168 343 ntTSL 3 BASIC16.96■□□□□ 0.31
Sox3P53784 Elof1-204ENSMUST00000214394 567 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
Sox3P53784 Eif1b-201ENSMUST00000007139 1035 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Sox3P53784 Nsfl1c-203ENSMUST00000103160 1369 ntTSL 5 BASIC16.96■□□□□ 0.31
Sox3P53784 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Sox3P53784 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
Sox3P53784 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
Sox3P53784 Cyp4f15-204ENSMUST00000168171 2168 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
Sox3P53784 Rock2-201ENSMUST00000020904 7644 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
Sox3P53784 Rnf112-203ENSMUST00000102661 3118 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Sox3P53784 Disc1-204ENSMUST00000115885 2408 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.3
Sox3P53784 Disc1-202ENSMUST00000075730 2408 ntAPPRIS P3 TSL 5 BASIC16.96■□□□□ 0.3
Sox3P53784 Htr6-202ENSMUST00000105802 2341 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.3
Sox3P53784 Chka-201ENSMUST00000025760 2319 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.3
Sox3P53784 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC16.96■□□□□ 0.3
Sox3P53784 Laptm4b-201ENSMUST00000022867 1902 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
Sox3P53784 Tcf7-202ENSMUST00000109071 1742 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
Sox3P53784 St7l-201ENSMUST00000059271 5728 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
Sox3P53784 Prdm8-202ENSMUST00000210477 3316 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
Sox3P53784 Cdca4-202ENSMUST00000220899 1994 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Sox3P53784 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Sox3P53784 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC16.95■□□□□ 0.3
Sox3P53784 2810004N23Rik-201ENSMUST00000034465 2340 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Sox3P53784 Snrnp35-202ENSMUST00000111453 1181 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
Sox3P53784 Tppp3-201ENSMUST00000014990 1127 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Sox3P53784 Gm21814-202ENSMUST00000203277 873 ntBASIC16.95■□□□□ 0.3
Sox3P53784 Gm32151-201ENSMUST00000223521 915 ntTSL 5 BASIC16.95■□□□□ 0.3
Sox3P53784 Grrp1-201ENSMUST00000060050 1226 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Sox3P53784 Tsr3-201ENSMUST00000063574 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Sox3P53784 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Sox3P53784 Lats2-201ENSMUST00000022531 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Sox3P53784 2310022A10Rik-201ENSMUST00000067386 2701 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Sox3P53784 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC16.95■□□□□ 0.3
Sox3P53784 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC16.95■□□□□ 0.3
Sox3P53784 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Sox3P53784 Tarbp1-201ENSMUST00000170518 6383 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
Sox3P53784 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Sox3P53784 Ddx59-201ENSMUST00000027655 2166 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Sox3P53784 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Sox3P53784 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
Sox3P53784 H2-Q6-201ENSMUST00000113879 981 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
Sox3P53784 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Sox3P53784 B930094E09Rik-201ENSMUST00000164667 1240 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
Sox3P53784 Cnn1-203ENSMUST00000214601 1225 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Sox3P53784 Gm11273-201ENSMUST00000044043 390 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
Sox3P53784 Fcmr-201ENSMUST00000038829 1600 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Sox3P53784 Tcf7l1-202ENSMUST00000114053 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Sox3P53784 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Sox3P53784 Dtnb-222ENSMUST00000174479 3689 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Sox3P53784 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Sox3P53784 Slc5a10-201ENSMUST00000051552 2261 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Sox3P53784 Agbl5-215ENSMUST00000202060 3121 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Sox3P53784 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Sox3P53784 Agpat3-202ENSMUST00000105387 1316 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Sox3P53784 Gdf1-201ENSMUST00000207684 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Sox3P53784 1300014J16Rik-201ENSMUST00000219015 1337 ntBASIC16.94■□□□□ 0.3
Sox3P53784 Ache-202ENSMUST00000085934 2176 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Sox3P53784 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Sox3P53784 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Sox3P53784 Pomgnt2-207ENSMUST00000217610 2413 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Sox3P53784 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC16.93■□□□□ 0.3
Sox3P53784 Ak5-201ENSMUST00000045262 3323 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Sox3P53784 Mag-207ENSMUST00000191081 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Sox3P53784 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC16.93■□□□□ 0.3
Sox3P53784 Nxt1-202ENSMUST00000109961 1116 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
Sox3P53784 Rint1-204ENSMUST00000117783 560 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Sox3P53784 Gm15138-201ENSMUST00000151778 379 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Sox3P53784 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Sox3P53784 Gm30025-201ENSMUST00000218555 728 ntBASIC16.93■□□□□ 0.3
Sox3P53784 Mrpl28-201ENSMUST00000025014 1048 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Sox3P53784 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Sox3P53784 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Sox3P53784 Nxt1-201ENSMUST00000047177 956 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Sox3P53784 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Sox3P53784 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Sox3P53784 Otud5-201ENSMUST00000033494 4259 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
Sox3P53784 Atp8b2-202ENSMUST00000107396 5705 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
Retrieved 100 of 76,532 protein–RNA pairs in 28.7 ms