Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 Fam241b-209ENSMUST00000142821 1283 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
Rfx3P48381 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Rfx3P48381 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Rfx3P48381 Zc3h15-201ENSMUST00000081591 2111 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Rfx3P48381 Arl1-202ENSMUST00000116234 2080 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Rfx3P48381 Rcbtb2-226ENSMUST00000171767 2692 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Rfx3P48381 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Rfx3P48381 Baiap2-204ENSMUST00000106231 4005 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Rfx3P48381 Nf2-205ENSMUST00000109910 4720 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
Rfx3P48381 Gm16897-201ENSMUST00000180780 2492 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Rfx3P48381 B3gat2-202ENSMUST00000140583 1737 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Rfx3P48381 Nectin3-202ENSMUST00000023335 9116 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Rfx3P48381 Nrxn1-217ENSMUST00000174337 3021 ntTSL 5 BASIC16.05■□□□□ 0.16
Rfx3P48381 Tpd52-205ENSMUST00000120143 6317 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Rfx3P48381 Prex1-201ENSMUST00000036719 6533 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Rfx3P48381 Mark3-202ENSMUST00000084953 3365 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Rfx3P48381 Rcn1-201ENSMUST00000006128 2720 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Rfx3P48381 Idnk-202ENSMUST00000109868 1462 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Rfx3P48381 Amigo1-202ENSMUST00000106656 5482 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Rfx3P48381 Glra1-202ENSMUST00000102716 2390 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
Rfx3P48381 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Rfx3P48381 Gm42569-201ENSMUST00000200539 472 ntBASIC16.04■□□□□ 0.16
Rfx3P48381 Hist1h2ao-201ENSMUST00000091745 480 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
Rfx3P48381 Eif4enif1-203ENSMUST00000110049 3614 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Rfx3P48381 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Rfx3P48381 Mycn-202ENSMUST00000130990 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Rfx3P48381 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
Rfx3P48381 Rybp-201ENSMUST00000101118 4503 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Rfx3P48381 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Rfx3P48381 Srf-201ENSMUST00000015749 4093 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Rfx3P48381 Xpo4-209ENSMUST00000174545 8680 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Rfx3P48381 Gm43672-201ENSMUST00000199072 1731 ntBASIC16.03■□□□□ 0.16
Rfx3P48381 Ube2z-201ENSMUST00000100528 3997 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Rfx3P48381 Il17rb-201ENSMUST00000016110 2061 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Rfx3P48381 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Rfx3P48381 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Rfx3P48381 Dpyd-204ENSMUST00000149101 531 ntTSL 3 BASIC16.03■□□□□ 0.16
Rfx3P48381 Tmbim6-202ENSMUST00000159209 944 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
Rfx3P48381 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC16.03■□□□□ 0.16
Rfx3P48381 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC16.03■□□□□ 0.16
Rfx3P48381 Sds-201ENSMUST00000066540 1207 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Rfx3P48381 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Rfx3P48381 Fgf4-201ENSMUST00000060336 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Rfx3P48381 Bend6-202ENSMUST00000115161 2231 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Rfx3P48381 Pmepa1-201ENSMUST00000036248 4538 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Rfx3P48381 Cbx1-201ENSMUST00000018810 1824 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Rfx3P48381 Dus1l-202ENSMUST00000106133 1762 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
Rfx3P48381 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Rfx3P48381 Haus8-201ENSMUST00000035960 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
Rfx3P48381 Rrs1-201ENSMUST00000072079 2048 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
Rfx3P48381 Ndel1-203ENSMUST00000108672 1653 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Rfx3P48381 Tradd-201ENSMUST00000034359 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Rfx3P48381 Mfsd13a-201ENSMUST00000086969 2278 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Rfx3P48381 Nptxr-203ENSMUST00000175858 4948 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
Rfx3P48381 Rmnd1-201ENSMUST00000042251 3139 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Rfx3P48381 Cadm3-201ENSMUST00000005470 2518 ntTSL 5 BASIC16.02■□□□□ 0.16
Rfx3P48381 Vsig10l-204ENSMUST00000203769 2473 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
Rfx3P48381 Wnt10b-202ENSMUST00000166022 1594 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Rfx3P48381 Pkn1-201ENSMUST00000005616 6662 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
Rfx3P48381 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC16.02■□□□□ 0.16
Rfx3P48381 Gm22325-201ENSMUST00000158904 308 ntBASIC16.02■□□□□ 0.16
Rfx3P48381 Gm26571-201ENSMUST00000181399 666 ntBASIC16.02■□□□□ 0.16
Rfx3P48381 Arv1-201ENSMUST00000034463 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Rfx3P48381 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
Rfx3P48381 Mid2-202ENSMUST00000112990 6271 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.15
Rfx3P48381 Stard3-201ENSMUST00000018311 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Rfx3P48381 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Rfx3P48381 Lmtk2-201ENSMUST00000041804 8114 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Rfx3P48381 AC121961.1-201ENSMUST00000218594 1779 ntBASIC16.02■□□□□ 0.15
Rfx3P48381 Gm26858-201ENSMUST00000180608 2040 ntTSL 5 BASIC16.02■□□□□ 0.15
Rfx3P48381 Coq5-201ENSMUST00000040421 2037 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Rfx3P48381 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC16.02■□□□□ 0.15
Rfx3P48381 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Rfx3P48381 Zcchc4-203ENSMUST00000113904 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
Rfx3P48381 Golga7-202ENSMUST00000121783 1945 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Rfx3P48381 Sncaip-205ENSMUST00000178011 3433 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
Rfx3P48381 Col11a2-203ENSMUST00000114255 5722 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
Rfx3P48381 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Rfx3P48381 A930017K11Rik-201ENSMUST00000162431 2539 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Rfx3P48381 Galnt16-204ENSMUST00000218943 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Rfx3P48381 Myo5b-201ENSMUST00000074157 6745 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Rfx3P48381 Dnlz-201ENSMUST00000028295 2916 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Rfx3P48381 BC051019-202ENSMUST00000106735 1957 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Rfx3P48381 Gm10849-201ENSMUST00000100397 618 ntBASIC16.01■□□□□ 0.15
Rfx3P48381 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC16.01■□□□□ 0.15
Rfx3P48381 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC16.01■□□□□ 0.15
Rfx3P48381 Gm36033-202ENSMUST00000214827 745 ntTSL 2 BASIC16.01■□□□□ 0.15
Rfx3P48381 AC164629.5-201ENSMUST00000220387 632 ntBASIC16.01■□□□□ 0.15
Rfx3P48381 Cxcl14-202ENSMUST00000224801 1467 ntBASIC16.01■□□□□ 0.15
Rfx3P48381 Ppm1b-202ENSMUST00000112304 3262 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
Rfx3P48381 Atp9a-203ENSMUST00000109176 3691 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Rfx3P48381 Msi2-201ENSMUST00000092794 1855 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Rfx3P48381 Xxylt1-201ENSMUST00000055389 2987 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Rfx3P48381 Trim67-202ENSMUST00000167588 8735 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
Rfx3P48381 Best2-203ENSMUST00000209421 2212 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Rfx3P48381 H2-Q7-202ENSMUST00000076256 1523 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
Rfx3P48381 Tuba3a-201ENSMUST00000088246 1509 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Rfx3P48381 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
Rfx3P48381 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Rfx3P48381 Ap2m1-202ENSMUST00000090023 2080 ntAPPRIS ALT1 TSL 1 (best) BASIC16■□□□□ 0.15
Retrieved 100 of 76,532 protein–RNA pairs in 20.2 ms