Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Rab1b-201ENSMUST00000025804 1835 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Rfx1P48377 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
Rfx1P48377 Rasl10a-201ENSMUST00000037218 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Rfx1P48377 Erlin1-201ENSMUST00000071698 3228 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
Rfx1P48377 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC21.25■□□□□ 0.99
Rfx1P48377 Tmtc4-209ENSMUST00000148661 2719 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Rfx1P48377 Syt9-201ENSMUST00000073459 3817 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Rfx1P48377 A730089K16Rik-201ENSMUST00000194526 2427 ntBASIC21.25■□□□□ 0.99
Rfx1P48377 Dgke-202ENSMUST00000107894 8347 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
Rfx1P48377 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Rfx1P48377 Zfp697-202ENSMUST00000178372 4703 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
Rfx1P48377 AC131586.2-201ENSMUST00000228370 1512 ntBASIC21.24■□□□□ 0.99
Rfx1P48377 Senp3-202ENSMUST00000066760 2219 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Rfx1P48377 Adam33-201ENSMUST00000052104 2795 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Rfx1P48377 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Rfx1P48377 Pet117-201ENSMUST00000183618 693 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
Rfx1P48377 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Rfx1P48377 Apba3-201ENSMUST00000057798 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Rfx1P48377 Impdh1-210ENSMUST00000162739 2471 ntTSL 5 BASIC21.24■□□□□ 0.99
Rfx1P48377 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Rfx1P48377 Dscc1-202ENSMUST00000110231 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Rfx1P48377 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Rfx1P48377 Arpc2-202ENSMUST00000113819 1313 ntTSL 5 BASIC21.24■□□□□ 0.99
Rfx1P48377 Yeats4-201ENSMUST00000020382 1327 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Rfx1P48377 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Rfx1P48377 Dnaaf5-203ENSMUST00000196441 2426 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Rfx1P48377 Ncoa5-201ENSMUST00000040381 3179 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Rfx1P48377 Rcbtb2-226ENSMUST00000171767 2692 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Rfx1P48377 Acsl3-205ENSMUST00000142704 2976 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Rfx1P48377 Tmed4-201ENSMUST00000004508 2003 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Rfx1P48377 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC21.23■□□□□ 0.99
Rfx1P48377 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Rfx1P48377 4930426D05Rik-202ENSMUST00000139804 1650 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Rfx1P48377 Phldb3-201ENSMUST00000073325 2273 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
Rfx1P48377 Gm43672-201ENSMUST00000199072 1731 ntBASIC21.23■□□□□ 0.99
Rfx1P48377 Ppp2r1b-205ENSMUST00000175640 1523 ntTSL 5 BASIC21.23■□□□□ 0.99
Rfx1P48377 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Rfx1P48377 Gpn3-201ENSMUST00000031420 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Rfx1P48377 AL591207.1-203ENSMUST00000222401 1380 ntTSL 5 BASIC21.23■□□□□ 0.99
Rfx1P48377 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Rfx1P48377 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Rfx1P48377 Bub3-201ENSMUST00000084502 2218 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Rfx1P48377 Smpdl3b-201ENSMUST00000030709 2006 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Rfx1P48377 Lzic-201ENSMUST00000030842 1817 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Rfx1P48377 2700046G09Rik-201ENSMUST00000181612 1641 ntTSL 2 BASIC21.22■□□□□ 0.99
Rfx1P48377 Mtx1-201ENSMUST00000073572 1617 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Rfx1P48377 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
Rfx1P48377 Adam15-203ENSMUST00000107446 1686 ntTSL 5 BASIC21.22■□□□□ 0.99
Rfx1P48377 Csnk1g3-201ENSMUST00000069597 4394 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
Rfx1P48377 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Rfx1P48377 Gpat3-203ENSMUST00000112887 3059 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Rfx1P48377 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Rfx1P48377 Tusc3-202ENSMUST00000169034 1262 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Rfx1P48377 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Rfx1P48377 Epdr1-204ENSMUST00000221014 692 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Rfx1P48377 Hmbox1-203ENSMUST00000175744 1771 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Rfx1P48377 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
Rfx1P48377 Acbd4-203ENSMUST00000107040 1959 ntTSL 2 BASIC21.21■□□□□ 0.99
Rfx1P48377 Slk-201ENSMUST00000026043 7278 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Rfx1P48377 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Rfx1P48377 Tfdp2-206ENSMUST00000185644 2646 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
Rfx1P48377 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Rfx1P48377 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Rfx1P48377 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Rfx1P48377 A430057M04Rik-202ENSMUST00000170150 2176 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Rfx1P48377 Tle4-201ENSMUST00000052011 4555 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Rfx1P48377 Ttc39a-201ENSMUST00000064129 2356 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
Rfx1P48377 Nptxr-203ENSMUST00000175858 4948 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Rfx1P48377 Prkar2a-201ENSMUST00000035220 4965 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
Rfx1P48377 Atp2c1-204ENSMUST00000112558 5642 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.99
Rfx1P48377 Atf7-209ENSMUST00000184485 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Rfx1P48377 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC21.2■□□□□ 0.98
Rfx1P48377 Meox1-201ENSMUST00000057054 2228 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Rfx1P48377 Il1rn-201ENSMUST00000114482 1986 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Rfx1P48377 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC21.2■□□□□ 0.98
Rfx1P48377 AC104834.1-201ENSMUST00000222611 1056 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
Rfx1P48377 E130116L18Rik-201ENSMUST00000066954 306 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
Rfx1P48377 Smim10l1-201ENSMUST00000100864 2842 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
Rfx1P48377 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Rfx1P48377 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Rfx1P48377 Mturn-203ENSMUST00000190641 5303 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Rfx1P48377 Pitpnm2-210ENSMUST00000162812 6952 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
Rfx1P48377 Fiz1-208ENSMUST00000208944 2306 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Rfx1P48377 Lzts2-203ENSMUST00000179108 2781 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Rfx1P48377 Col15a1-201ENSMUST00000082303 5102 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
Rfx1P48377 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Rfx1P48377 Pop5-201ENSMUST00000081497 1025 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
Rfx1P48377 Dtd2-202ENSMUST00000085404 1012 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Rfx1P48377 Hist1h2ag-201ENSMUST00000091741 485 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
Rfx1P48377 Camk2d-228ENSMUST00000200171 5396 ntTSL 5 BASIC21.19■□□□□ 0.98
Rfx1P48377 Ptpa-202ENSMUST00000113601 1838 ntTSL 5 BASIC21.19■□□□□ 0.98
Rfx1P48377 Acss2-202ENSMUST00000065973 2876 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Rfx1P48377 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Rfx1P48377 Rala-201ENSMUST00000009003 2688 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Rfx1P48377 Ptprf-201ENSMUST00000049074 7656 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
Rfx1P48377 Matk-201ENSMUST00000105328 2228 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Rfx1P48377 Tmem131-208ENSMUST00000194563 6698 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
Rfx1P48377 Yipf2-202ENSMUST00000078572 1894 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Rfx1P48377 Snx25-203ENSMUST00000110378 3445 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
Rfx1P48377 Col13a1-204ENSMUST00000105453 2935 ntTSL 2 BASIC21.18■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 20.8 ms