Protein–RNA interactions for Protein: P15975

Usp53, Inactive ubiquitin carboxyl-terminal hydrolase 53, mousemouse

Predictions only

Length 1,069 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp53P15975 Hmces-202ENSMUST00000113606 1572 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Usp53P15975 Gm21949-201ENSMUST00000182006 2369 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
Usp53P15975 Lzic-201ENSMUST00000030842 1817 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Usp53P15975 AC135963.1-201ENSMUST00000211640 717 ntBASIC20.56■□□□□ 0.88
Usp53P15975 Prdx5-201ENSMUST00000025904 1262 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Usp53P15975 Lce1m-201ENSMUST00000029520 874 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Usp53P15975 Ntpcr-201ENSMUST00000034313 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Usp53P15975 Tollip-202ENSMUST00000055819 1100 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Usp53P15975 Csf1-203ENSMUST00000120243 2097 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
Usp53P15975 Il17rc-201ENSMUST00000058300 2302 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Usp53P15975 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Usp53P15975 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Usp53P15975 Tmem62-201ENSMUST00000067582 2921 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Usp53P15975 Pomgnt2-201ENSMUST00000084743 2365 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Usp53P15975 2810408A11Rik-201ENSMUST00000018714 1485 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Usp53P15975 Necab3-202ENSMUST00000109716 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Usp53P15975 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Usp53P15975 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Usp53P15975 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC20.55■□□□□ 0.88
Usp53P15975 Gm26829-201ENSMUST00000180581 934 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Usp53P15975 Gm3375-201ENSMUST00000203929 796 ntBASIC20.55■□□□□ 0.88
Usp53P15975 Cmc1-202ENSMUST00000215799 531 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Usp53P15975 Btg1-202ENSMUST00000218953 668 ntTSL 2 BASIC20.55■□□□□ 0.88
Usp53P15975 Timm23-208ENSMUST00000226683 750 ntBASIC20.55■□□□□ 0.88
Usp53P15975 Gm10273-201ENSMUST00000092511 1126 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
Usp53P15975 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Usp53P15975 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Usp53P15975 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC20.55■□□□□ 0.88
Usp53P15975 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Usp53P15975 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
Usp53P15975 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Usp53P15975 Bcs1l-202ENSMUST00000113732 1679 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
Usp53P15975 Ipp-202ENSMUST00000106479 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Usp53P15975 Ipp-201ENSMUST00000030461 2115 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
Usp53P15975 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Usp53P15975 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
Usp53P15975 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Usp53P15975 2210408F21Rik-211ENSMUST00000151800 750 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Usp53P15975 Cib1-207ENSMUST00000206084 772 ntTSL 3 BASIC20.54■□□□□ 0.88
Usp53P15975 Flywch2-201ENSMUST00000024704 694 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Usp53P15975 Grhpr-201ENSMUST00000045078 1280 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Usp53P15975 Cib1-202ENSMUST00000071457 702 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Usp53P15975 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
Usp53P15975 4430402I18Rik-205ENSMUST00000162110 1559 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
Usp53P15975 Hspbp1-201ENSMUST00000079970 1593 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Usp53P15975 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Usp53P15975 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
Usp53P15975 4930452B06Rik-201ENSMUST00000102996 2681 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Usp53P15975 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Usp53P15975 Map6-202ENSMUST00000107100 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Usp53P15975 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Usp53P15975 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC20.53■□□□□ 0.88
Usp53P15975 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
Usp53P15975 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC20.53■□□□□ 0.88
Usp53P15975 Ccnd2-204ENSMUST00000201637 1006 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Usp53P15975 Gm43799-201ENSMUST00000201845 579 ntBASIC20.53■□□□□ 0.88
Usp53P15975 AC153881.2-201ENSMUST00000214877 204 ntBASIC20.53■□□□□ 0.88
Usp53P15975 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Usp53P15975 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
Usp53P15975 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Usp53P15975 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Usp53P15975 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Usp53P15975 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Usp53P15975 Fam222a-201ENSMUST00000043650 2930 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Usp53P15975 Laptm4b-201ENSMUST00000022867 1902 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Usp53P15975 Larp1b-206ENSMUST00000191872 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Usp53P15975 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Usp53P15975 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Usp53P15975 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Usp53P15975 Zfp78-205ENSMUST00000208030 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Usp53P15975 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Usp53P15975 A230050P20Rik-201ENSMUST00000043911 1683 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Usp53P15975 9030624G23Rik-201ENSMUST00000101538 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Usp53P15975 Hjurp-202ENSMUST00000065420 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Usp53P15975 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC20.52■□□□□ 0.88
Usp53P15975 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Usp53P15975 Echdc2-204ENSMUST00000116309 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Usp53P15975 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
Usp53P15975 Josd2-206ENSMUST00000121922 684 ntTSL 5 BASIC20.52■□□□□ 0.88
Usp53P15975 Gm30025-201ENSMUST00000218555 728 ntBASIC20.52■□□□□ 0.88
Usp53P15975 Odf3b-204ENSMUST00000227834 930 ntBASIC20.52■□□□□ 0.88
Usp53P15975 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Usp53P15975 Cacnb3-201ENSMUST00000003442 2819 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Usp53P15975 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC20.52■□□□□ 0.88
Usp53P15975 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Usp53P15975 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Usp53P15975 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC20.52■□□□□ 0.87
Usp53P15975 Pomgnt2-207ENSMUST00000217610 2413 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Usp53P15975 Fcgrt-201ENSMUST00000003512 1770 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Usp53P15975 Apbb1-219ENSMUST00000191601 2690 ntAPPRIS P4 TSL 5 BASIC20.51■□□□□ 0.87
Usp53P15975 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Usp53P15975 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Usp53P15975 Tnnt2-202ENSMUST00000112085 1076 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
Usp53P15975 Tnnt2-203ENSMUST00000112086 1094 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
Usp53P15975 Tnnt2-204ENSMUST00000112087 1112 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
Usp53P15975 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
Usp53P15975 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
Usp53P15975 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
Usp53P15975 Tnnt2-206ENSMUST00000178854 1076 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
Usp53P15975 Tnnt2-211ENSMUST00000189355 1112 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 48.6 ms