Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Gm43338-201ENSMUST00000198617 2223 ntBASIC19.2■□□□□ 0.66
RaraP11416 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
RaraP11416 Slc7a6os-201ENSMUST00000035925 1246 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
RaraP11416 Tbx2-201ENSMUST00000000095 3626 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
RaraP11416 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
RaraP11416 Scly-201ENSMUST00000027532 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
RaraP11416 Cdh4-201ENSMUST00000000314 6388 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
RaraP11416 Tor3a-207ENSMUST00000188964 1750 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RaraP11416 Zc3h14-203ENSMUST00000110104 3146 ntTSL 5 BASIC19.19■□□□□ 0.66
RaraP11416 Pi4k2b-201ENSMUST00000031081 3139 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
RaraP11416 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RaraP11416 Farp1-201ENSMUST00000026635 4885 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
RaraP11416 Lrrfip2-202ENSMUST00000098340 3191 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
RaraP11416 Gm26676-201ENSMUST00000181877 2226 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
RaraP11416 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
RaraP11416 Gm6211-202ENSMUST00000167849 925 ntBASIC19.19■□□□□ 0.66
RaraP11416 Prrg2-201ENSMUST00000007981 1295 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
RaraP11416 Klk9-201ENSMUST00000005891 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RaraP11416 Racgap1-213ENSMUST00000171702 3052 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RaraP11416 Dusp9-201ENSMUST00000019701 2722 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RaraP11416 Mast4-205ENSMUST00000166726 5968 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
RaraP11416 Ptpdc1-204ENSMUST00000222028 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
RaraP11416 Eif2b5-201ENSMUST00000003320 3186 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RaraP11416 Cep68-204ENSMUST00000162811 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
RaraP11416 Podxl2-201ENSMUST00000038409 1994 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
RaraP11416 Chpt1-201ENSMUST00000020253 3898 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
RaraP11416 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RaraP11416 Axin1-203ENSMUST00000163421 2890 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
RaraP11416 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RaraP11416 Frmd5-203ENSMUST00000121219 2262 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
RaraP11416 Rcc1-201ENSMUST00000030726 2278 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
RaraP11416 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RaraP11416 Nptx1-201ENSMUST00000026670 5217 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RaraP11416 Apba3-201ENSMUST00000057798 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RaraP11416 Ttc39a-201ENSMUST00000064129 2356 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
RaraP11416 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RaraP11416 Plppr2-201ENSMUST00000046371 2626 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
RaraP11416 Krt73-201ENSMUST00000063292 2165 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RaraP11416 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
RaraP11416 Gm38285-201ENSMUST00000192928 922 ntBASIC19.18■□□□□ 0.66
RaraP11416 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC19.18■□□□□ 0.66
RaraP11416 Ptges3-202ENSMUST00000084771 1559 ntTSL 5 BASIC19.18■□□□□ 0.66
RaraP11416 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
RaraP11416 Esrrb-201ENSMUST00000021680 2136 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
RaraP11416 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RaraP11416 Ccnd3-215ENSMUST00000183044 2064 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RaraP11416 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RaraP11416 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
RaraP11416 Slc35e1-202ENSMUST00000152080 4383 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RaraP11416 Gm7290-201ENSMUST00000104990 617 ntBASIC19.17■□□□□ 0.66
RaraP11416 Gm12918-201ENSMUST00000120234 636 ntBASIC19.17■□□□□ 0.66
RaraP11416 Dnajc19-204ENSMUST00000120805 551 ntTSL 2 BASIC19.17■□□□□ 0.66
RaraP11416 Gm15710-201ENSMUST00000121821 636 ntBASIC19.17■□□□□ 0.66
RaraP11416 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC19.17■□□□□ 0.66
RaraP11416 Gm5075-201ENSMUST00000196916 622 ntBASIC19.17■□□□□ 0.66
RaraP11416 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC19.17■□□□□ 0.66
RaraP11416 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC19.17■□□□□ 0.66
RaraP11416 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC19.17■□□□□ 0.66
RaraP11416 Eepd1-201ENSMUST00000040677 2723 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RaraP11416 9330160F10Rik-201ENSMUST00000101007 2766 ntBASIC19.17■□□□□ 0.66
RaraP11416 Ppme1-201ENSMUST00000032963 2772 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RaraP11416 Arpc1a-201ENSMUST00000031625 1632 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RaraP11416 9030624G23Rik-201ENSMUST00000101538 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RaraP11416 Atf7-209ENSMUST00000184485 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RaraP11416 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
RaraP11416 Scube2-202ENSMUST00000106728 2890 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
RaraP11416 Naa60-212ENSMUST00000186375 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RaraP11416 Mag-201ENSMUST00000040548 2419 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
RaraP11416 Prpsap1-201ENSMUST00000106391 1841 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RaraP11416 Serinc2-201ENSMUST00000105996 1878 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
RaraP11416 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC19.16■□□□□ 0.66
RaraP11416 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC19.16■□□□□ 0.66
RaraP11416 Rrp9-201ENSMUST00000047721 1586 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RaraP11416 Appl2-201ENSMUST00000020500 3020 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RaraP11416 Il1rn-201ENSMUST00000114482 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RaraP11416 Knstrn-202ENSMUST00000110842 925 ntAPPRIS ALT2 TSL 3 BASIC19.16■□□□□ 0.66
RaraP11416 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
RaraP11416 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC19.16■□□□□ 0.66
RaraP11416 Gm20390-201ENSMUST00000170303 991 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
RaraP11416 Gm42569-201ENSMUST00000200539 472 ntBASIC19.16■□□□□ 0.66
RaraP11416 Nfu1-201ENSMUST00000032060 948 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
RaraP11416 Stxbp5-209ENSMUST00000141722 4702 ntAPPRIS P2 TSL 5 BASIC19.16■□□□□ 0.66
RaraP11416 C1qtnf12-201ENSMUST00000024338 1315 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RaraP11416 Wisp2-201ENSMUST00000029188 1719 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RaraP11416 Hapln2-201ENSMUST00000005014 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RaraP11416 Tmem81-201ENSMUST00000058167 1742 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RaraP11416 Slc39a10-201ENSMUST00000027131 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RaraP11416 Cdc123-201ENSMUST00000043864 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RaraP11416 Nfib-204ENSMUST00000107246 3075 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
RaraP11416 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RaraP11416 Gm27029-202ENSMUST00000107259 1855 ntAPPRIS P5 TSL 5 BASIC19.16■□□□□ 0.66
RaraP11416 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
RaraP11416 Mpped2-202ENSMUST00000111063 2848 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RaraP11416 Tor2a-201ENSMUST00000009707 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RaraP11416 Pmpcb-201ENSMUST00000030882 1615 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RaraP11416 Elac2-203ENSMUST00000108697 2612 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
RaraP11416 Gm26885-201ENSMUST00000181920 1688 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
RaraP11416 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
RaraP11416 Tmbim6-202ENSMUST00000159209 944 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
RaraP11416 AC133650.2-201ENSMUST00000217036 607 ntTSL 3 BASIC19.15■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 17.8 ms