Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Stac2-201ENSMUST00000017544 3050 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Hoxd3P09027 Siglecf-202ENSMUST00000121494 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Hoxd3P09027 Man1c1-201ENSMUST00000038628 4285 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Hoxd3P09027 Rassf1-201ENSMUST00000010211 1727 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Hoxd3P09027 Atp2c1-204ENSMUST00000112558 5642 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
Hoxd3P09027 Pick1-201ENSMUST00000018295 1977 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Hoxd3P09027 Ermp1-203ENSMUST00000159692 7058 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Hoxd3P09027 Gm12382-201ENSMUST00000122005 922 ntBASIC13.78□□□□□ -0.2
Hoxd3P09027 Gm15723-201ENSMUST00000139331 600 ntTSL 3 BASIC13.78□□□□□ -0.2
Hoxd3P09027 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Hoxd3P09027 Nme4-201ENSMUST00000025007 912 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Hoxd3P09027 Gnb5-201ENSMUST00000076889 1188 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Hoxd3P09027 A330009N23Rik-201ENSMUST00000180639 1392 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Hoxd3P09027 Mfsd14a-201ENSMUST00000029570 2782 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Hoxd3P09027 Ptprd-206ENSMUST00000107289 9899 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
Hoxd3P09027 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC13.78□□□□□ -0.2
Hoxd3P09027 9530080O11Rik-201ENSMUST00000137239 1475 ntTSL 2 BASIC13.78□□□□□ -0.2
Hoxd3P09027 Gm38342-201ENSMUST00000195710 2980 ntBASIC13.78□□□□□ -0.2
Hoxd3P09027 Eif6-201ENSMUST00000029142 1500 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Hoxd3P09027 4930432B10Rik-202ENSMUST00000181330 1612 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Hoxd3P09027 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
Hoxd3P09027 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
Hoxd3P09027 Khsrp-201ENSMUST00000007814 3990 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Hoxd3P09027 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC13.78□□□□□ -0.2
Hoxd3P09027 Gm43231-201ENSMUST00000202960 2258 ntBASIC13.78□□□□□ -0.2
Hoxd3P09027 Nectin3-202ENSMUST00000023335 9116 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.2
Hoxd3P09027 Capg-202ENSMUST00000114071 1400 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Hoxd3P09027 Tfg-202ENSMUST00000121554 716 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.21
Hoxd3P09027 AL672049.1-201ENSMUST00000197943 91 ntBASIC13.77□□□□□ -0.21
Hoxd3P09027 Anapc5-218ENSMUST00000200645 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
Hoxd3P09027 Gm45337-201ENSMUST00000210537 1267 ntAPPRIS P1 BASIC13.77□□□□□ -0.21
Hoxd3P09027 Grina-201ENSMUST00000023225 1693 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Hoxd3P09027 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.21
Hoxd3P09027 Tfap4-201ENSMUST00000005862 2113 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Hoxd3P09027 Galnt1-206ENSMUST00000170243 4108 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Hoxd3P09027 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Hoxd3P09027 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Hoxd3P09027 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Hoxd3P09027 Oxct2b-201ENSMUST00000102648 1735 ntAPPRIS P1 BASIC13.76□□□□□ -0.21
Hoxd3P09027 Arhgap42-203ENSMUST00000183182 1458 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Hoxd3P09027 Ero1l-201ENSMUST00000022378 4418 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Hoxd3P09027 Fem1c-201ENSMUST00000036226 5726 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Hoxd3P09027 Pten-201ENSMUST00000013807 8292 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Hoxd3P09027 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Hoxd3P09027 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC13.76□□□□□ -0.21
Hoxd3P09027 Adrb3-202ENSMUST00000117565 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
Hoxd3P09027 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
Hoxd3P09027 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Hoxd3P09027 Mir7071-201ENSMUST00000184847 69 ntBASIC13.76□□□□□ -0.21
Hoxd3P09027 Gm37292-201ENSMUST00000192062 758 ntBASIC13.76□□□□□ -0.21
Hoxd3P09027 4930554G22Rik-201ENSMUST00000196102 686 ntBASIC13.76□□□□□ -0.21
Hoxd3P09027 AC175538.1-201ENSMUST00000225343 1269 ntBASIC13.76□□□□□ -0.21
Hoxd3P09027 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
Hoxd3P09027 Abhd13-201ENSMUST00000048216 5074 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Hoxd3P09027 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
Hoxd3P09027 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC13.76□□□□□ -0.21
Hoxd3P09027 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Hoxd3P09027 Slc25a39-202ENSMUST00000107098 1606 ntAPPRIS ALT1 TSL 5 BASIC13.75□□□□□ -0.21
Hoxd3P09027 Samd8-201ENSMUST00000022292 1574 ntAPPRIS P2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Hoxd3P09027 Mtcp1-201ENSMUST00000033542 1592 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Hoxd3P09027 Erlin1-202ENSMUST00000112028 3136 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Hoxd3P09027 Btnl9-201ENSMUST00000046522 5273 ntAPPRIS P2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Hoxd3P09027 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Hoxd3P09027 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Hoxd3P09027 Golga7-202ENSMUST00000121783 1945 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Hoxd3P09027 Rint1-204ENSMUST00000117783 560 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Hoxd3P09027 Gm10830-201ENSMUST00000186379 636 ntTSL 5 BASIC13.75□□□□□ -0.21
Hoxd3P09027 Smim10l1-204ENSMUST00000191462 574 ntTSL 3 BASIC13.75□□□□□ -0.21
Hoxd3P09027 Gm37055-201ENSMUST00000191866 133 ntBASIC13.75□□□□□ -0.21
Hoxd3P09027 Gm37939-201ENSMUST00000192309 447 ntTSL 5 BASIC13.75□□□□□ -0.21
Hoxd3P09027 Hsbp1-202ENSMUST00000212468 638 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
Hoxd3P09027 Syngr1-202ENSMUST00000009728 819 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Hoxd3P09027 Dynll2-202ENSMUST00000107923 2443 ntAPPRIS P1 TSL 3 BASIC13.75□□□□□ -0.21
Hoxd3P09027 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Hoxd3P09027 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
Hoxd3P09027 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Hoxd3P09027 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Hoxd3P09027 Fam172a-202ENSMUST00000099358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Hoxd3P09027 Ankle1-202ENSMUST00000120725 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Hoxd3P09027 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Hoxd3P09027 Ncmap-205ENSMUST00000105860 2000 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Hoxd3P09027 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Hoxd3P09027 Scamp3-201ENSMUST00000029684 1489 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
Hoxd3P09027 Ric1-201ENSMUST00000043610 7190 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
Hoxd3P09027 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Hoxd3P09027 Ankdd1a-201ENSMUST00000061766 1443 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
Hoxd3P09027 Scrib-201ENSMUST00000002603 5599 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
Hoxd3P09027 Espn-209ENSMUST00000105655 1350 ntTSL 5 BASIC13.74□□□□□ -0.21
Hoxd3P09027 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Hoxd3P09027 Egln2-202ENSMUST00000108382 1756 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
Hoxd3P09027 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Hoxd3P09027 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC13.74□□□□□ -0.21
Hoxd3P09027 Cox7a2l-202ENSMUST00000167741 1147 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Hoxd3P09027 Igflr1-202ENSMUST00000172251 1224 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Hoxd3P09027 Mir2861-201ENSMUST00000175539 82 ntBASIC13.74□□□□□ -0.21
Hoxd3P09027 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
Hoxd3P09027 Nudt22-203ENSMUST00000180765 1073 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
Hoxd3P09027 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC13.74□□□□□ -0.21
Hoxd3P09027 4932443I19Rik-204ENSMUST00000214337 1212 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
Hoxd3P09027 AC166341.7-201ENSMUST00000221698 126 ntBASIC13.74□□□□□ -0.21
Retrieved 100 of 76,532 protein–RNA pairs in 34.6 ms