Protein–RNA interactions for Protein: O88689

Pcdha4, Protocadherin alpha-4, mousemouse

Predictions only

Length 947 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdha4O88689 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Pcdha4O88689 Ndufa10-201ENSMUST00000027478 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Pcdha4O88689 Grina-201ENSMUST00000023225 1693 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Pcdha4O88689 Tspan10-201ENSMUST00000044105 1680 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Pcdha4O88689 Pmpcb-201ENSMUST00000030882 1615 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Pcdha4O88689 Fam222a-201ENSMUST00000043650 2930 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Pcdha4O88689 Cckbr-201ENSMUST00000033189 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Pcdha4O88689 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
Pcdha4O88689 Gm6576-201ENSMUST00000169678 883 ntBASIC19.85■□□□□ 0.77
Pcdha4O88689 Gm45148-201ENSMUST00000208578 513 ntTSL 5 BASIC19.85■□□□□ 0.77
Pcdha4O88689 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC19.85■□□□□ 0.77
Pcdha4O88689 Camk2b-202ENSMUST00000019133 2223 ntTSL 5 BASIC19.85■□□□□ 0.77
Pcdha4O88689 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Pcdha4O88689 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Pcdha4O88689 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Pcdha4O88689 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
Pcdha4O88689 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Pcdha4O88689 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Pcdha4O88689 Prkra-201ENSMUST00000002808 1614 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Pcdha4O88689 Akt2-205ENSMUST00000108344 4544 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Pcdha4O88689 Lzic-201ENSMUST00000030842 1817 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Pcdha4O88689 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Pcdha4O88689 Ost4-201ENSMUST00000132034 576 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Pcdha4O88689 Nudt22-203ENSMUST00000180765 1073 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
Pcdha4O88689 Cdk2ap2-201ENSMUST00000025779 1080 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Pcdha4O88689 Ly6g6d-201ENSMUST00000007259 546 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Pcdha4O88689 Hjurp-202ENSMUST00000065420 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Pcdha4O88689 Capg-202ENSMUST00000114071 1400 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Pcdha4O88689 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Pcdha4O88689 Ccser1-203ENSMUST00000126214 5657 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
Pcdha4O88689 A330009N23Rik-201ENSMUST00000180639 1392 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Pcdha4O88689 Samd8-201ENSMUST00000022292 1574 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.77
Pcdha4O88689 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC19.83■□□□□ 0.77
Pcdha4O88689 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
Pcdha4O88689 Adrb3-202ENSMUST00000117565 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
Pcdha4O88689 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Pcdha4O88689 Gm5901-201ENSMUST00000106805 1140 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
Pcdha4O88689 Gm13401-201ENSMUST00000117074 291 ntBASIC19.83■□□□□ 0.77
Pcdha4O88689 Grk6-206ENSMUST00000224995 2971 ntBASIC19.83■□□□□ 0.77
Pcdha4O88689 Arhgef33-211ENSMUST00000225658 473 ntBASIC19.83■□□□□ 0.77
Pcdha4O88689 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Pcdha4O88689 Pfn2-201ENSMUST00000066882 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Pcdha4O88689 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Pcdha4O88689 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.76
Pcdha4O88689 Cdc123-201ENSMUST00000043864 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Pcdha4O88689 9030624G23Rik-201ENSMUST00000101538 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Pcdha4O88689 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Pcdha4O88689 Shq1-204ENSMUST00000170667 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Pcdha4O88689 Acot7-203ENSMUST00000105652 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
Pcdha4O88689 Ubald1-201ENSMUST00000037843 1851 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Pcdha4O88689 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Pcdha4O88689 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Pcdha4O88689 Atp8a1-204ENSMUST00000113652 854 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Pcdha4O88689 Mir1199-201ENSMUST00000117015 119 ntBASIC19.82■□□□□ 0.76
Pcdha4O88689 Gm13181-201ENSMUST00000120117 1069 ntBASIC19.82■□□□□ 0.76
Pcdha4O88689 2510002D24Rik-204ENSMUST00000191388 995 ntTSL 5 BASIC19.82■□□□□ 0.76
Pcdha4O88689 Smim15-206ENSMUST00000226042 1092 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
Pcdha4O88689 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
Pcdha4O88689 Lgals7-201ENSMUST00000081457 754 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Pcdha4O88689 Izumo2-201ENSMUST00000085422 632 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Pcdha4O88689 4930540M05Rik-201ENSMUST00000180527 2068 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Pcdha4O88689 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
Pcdha4O88689 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
Pcdha4O88689 Gm21949-201ENSMUST00000182006 2369 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
Pcdha4O88689 Rsph6a-201ENSMUST00000035521 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Pcdha4O88689 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC19.81■□□□□ 0.76
Pcdha4O88689 Zfp428-203ENSMUST00000177205 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Pcdha4O88689 Cyp4f16-201ENSMUST00000003416 2227 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Pcdha4O88689 Tmem81-201ENSMUST00000058167 1742 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Pcdha4O88689 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Pcdha4O88689 Icam5-201ENSMUST00000019616 2947 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Pcdha4O88689 Mzt1-201ENSMUST00000042662 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Pcdha4O88689 Ppp2r1b-206ENSMUST00000175645 1931 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
Pcdha4O88689 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Pcdha4O88689 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Pcdha4O88689 4732440D04Rik-203ENSMUST00000191825 5428 ntBASIC19.8■□□□□ 0.76
Pcdha4O88689 Mrpl13-205ENSMUST00000172387 1223 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Pcdha4O88689 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
Pcdha4O88689 AC175538.1-201ENSMUST00000225343 1269 ntBASIC19.8■□□□□ 0.76
Pcdha4O88689 Prss21-201ENSMUST00000024928 1094 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Pcdha4O88689 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
Pcdha4O88689 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Pcdha4O88689 Gata5os-201ENSMUST00000069943 1678 ntTSL 2 BASIC19.8■□□□□ 0.76
Pcdha4O88689 Antxr1-201ENSMUST00000042025 5253 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Pcdha4O88689 Spata2l-202ENSMUST00000166768 2707 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Pcdha4O88689 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Pcdha4O88689 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Pcdha4O88689 Dexi-203ENSMUST00000184863 2537 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
Pcdha4O88689 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Pcdha4O88689 Klhl25-202ENSMUST00000171155 3403 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Pcdha4O88689 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
Pcdha4O88689 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC19.79■□□□□ 0.76
Pcdha4O88689 Galk2-202ENSMUST00000094604 1928 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Pcdha4O88689 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Pcdha4O88689 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
Pcdha4O88689 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC19.79■□□□□ 0.76
Pcdha4O88689 Prr29-201ENSMUST00000009354 1112 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Pcdha4O88689 Larp1b-206ENSMUST00000191872 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Pcdha4O88689 Fcgrt-201ENSMUST00000003512 1770 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Pcdha4O88689 Six3-203ENSMUST00000176081 3680 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Retrieved 100 of 76,532 protein–RNA pairs in 42.8 ms