Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Chd3B1AR17 1810012K08Rik-201ENSMUST00000155199 574 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Chd3B1AR17 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
Chd3B1AR17 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Chd3B1AR17 Iqsec1-210ENSMUST00000212100 3500 ntTSL 5 BASIC17.44■□□□□ 0.38
Chd3B1AR17 Dlk2-202ENSMUST00000166280 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Chd3B1AR17 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
Chd3B1AR17 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Chd3B1AR17 Hpn-202ENSMUST00000108102 1830 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Chd3B1AR17 Gm13836-201ENSMUST00000121159 501 ntBASIC17.43■□□□□ 0.38
Chd3B1AR17 Gm38027-201ENSMUST00000192315 235 ntBASIC17.43■□□□□ 0.38
Chd3B1AR17 Gm32151-201ENSMUST00000223521 915 ntTSL 5 BASIC17.43■□□□□ 0.38
Chd3B1AR17 Pfdn4-201ENSMUST00000063682 935 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Chd3B1AR17 F8a-201ENSMUST00000105111 2505 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
Chd3B1AR17 Map6-202ENSMUST00000107100 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Chd3B1AR17 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Chd3B1AR17 Ets1-206ENSMUST00000184887 2107 ntTSL 5 BASIC17.43■□□□□ 0.38
Chd3B1AR17 Zfp943-202ENSMUST00000153985 1598 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Chd3B1AR17 Cyth2-202ENSMUST00000107729 2519 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Chd3B1AR17 Tspan10-201ENSMUST00000044105 1680 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Chd3B1AR17 Uhmk1-202ENSMUST00000123399 7775 ntTSL 5 BASIC17.43■□□□□ 0.38
Chd3B1AR17 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
Chd3B1AR17 Gm13401-201ENSMUST00000117074 291 ntBASIC17.43■□□□□ 0.38
Chd3B1AR17 Fxyd5-208ENSMUST00000161805 1166 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
Chd3B1AR17 Gm7889-201ENSMUST00000185591 958 ntBASIC17.43■□□□□ 0.38
Chd3B1AR17 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Chd3B1AR17 Eif1a-202ENSMUST00000168382 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Chd3B1AR17 Fcgrt-201ENSMUST00000003512 1770 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Chd3B1AR17 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Chd3B1AR17 Ddah2-204ENSMUST00000174493 1254 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Chd3B1AR17 Epn1-207ENSMUST00000208634 2127 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
Chd3B1AR17 Gm45618-201ENSMUST00000209890 660 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
Chd3B1AR17 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Chd3B1AR17 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Chd3B1AR17 Akain1-201ENSMUST00000169935 2296 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Chd3B1AR17 Mgme1-203ENSMUST00000110028 2308 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Chd3B1AR17 Ppp2r1b-205ENSMUST00000175640 1523 ntTSL 5 BASIC17.42■□□□□ 0.38
Chd3B1AR17 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Chd3B1AR17 Btg1-202ENSMUST00000218953 668 ntTSL 2 BASIC17.41■□□□□ 0.38
Chd3B1AR17 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Chd3B1AR17 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Chd3B1AR17 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Chd3B1AR17 Hmces-202ENSMUST00000113606 1572 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Chd3B1AR17 Hmg20b-201ENSMUST00000020454 1621 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Chd3B1AR17 Slc25a41-202ENSMUST00000169012 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Chd3B1AR17 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
Chd3B1AR17 Gm26829-201ENSMUST00000180581 934 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Chd3B1AR17 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
Chd3B1AR17 Agbl4-205ENSMUST00000106591 1406 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Chd3B1AR17 Prdm8-202ENSMUST00000210477 3316 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
Chd3B1AR17 Csnk1e-203ENSMUST00000122044 3174 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Chd3B1AR17 Gm3331-201ENSMUST00000183423 1017 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Chd3B1AR17 Ssr2-207ENSMUST00000195014 1059 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Chd3B1AR17 AC159205.6-201ENSMUST00000224935 887 ntBASIC17.4■□□□□ 0.38
Chd3B1AR17 Camsap3-207ENSMUST00000207712 2539 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Chd3B1AR17 Arrdc4-202ENSMUST00000118110 1129 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Chd3B1AR17 Gm13559-201ENSMUST00000120476 863 ntBASIC17.4■□□□□ 0.38
Chd3B1AR17 Izumo1r-204ENSMUST00000121116 726 ntTSL 2 BASIC17.4■□□□□ 0.38
Chd3B1AR17 1700007L15Rik-201ENSMUST00000180923 737 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Chd3B1AR17 Cdk2ap2-201ENSMUST00000025779 1080 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Chd3B1AR17 Guca1a-201ENSMUST00000059348 871 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Chd3B1AR17 Nudt17-204ENSMUST00000200387 2108 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
Chd3B1AR17 Naa60-212ENSMUST00000186375 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
Chd3B1AR17 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
Chd3B1AR17 Gm5953-201ENSMUST00000220644 2616 ntBASIC17.39■□□□□ 0.37
Chd3B1AR17 Nr1h2-201ENSMUST00000073488 1999 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
Chd3B1AR17 Hpn-209ENSMUST00000168884 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Chd3B1AR17 Tra2a-204ENSMUST00000204189 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Chd3B1AR17 Acp5-204ENSMUST00000213815 1419 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
Chd3B1AR17 Acp5-206ENSMUST00000217643 1447 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
Chd3B1AR17 Ablim1-204ENSMUST00000111524 1251 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Chd3B1AR17 Ankrd39-202ENSMUST00000194894 664 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Chd3B1AR17 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Chd3B1AR17 4930452B06Rik-201ENSMUST00000102996 2681 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Chd3B1AR17 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
Chd3B1AR17 Tmed5-204ENSMUST00000118036 1045 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Chd3B1AR17 Gm13816-201ENSMUST00000152230 715 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Chd3B1AR17 Aldh1a3-204ENSMUST00000174215 1066 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Chd3B1AR17 Gm42738-201ENSMUST00000201813 439 ntTSL 3 BASIC17.38■□□□□ 0.37
Chd3B1AR17 Fam222a-201ENSMUST00000043650 2930 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Chd3B1AR17 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Chd3B1AR17 Rogdi-207ENSMUST00000202281 1355 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Chd3B1AR17 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Chd3B1AR17 AC121577.1-201ENSMUST00000227302 707 ntBASIC17.38■□□□□ 0.37
Chd3B1AR17 9030624G23Rik-201ENSMUST00000101538 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Chd3B1AR17 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Chd3B1AR17 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Chd3B1AR17 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Chd3B1AR17 Dhh-201ENSMUST00000023737 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Chd3B1AR17 Pomgnt2-201ENSMUST00000084743 2365 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Chd3B1AR17 Gm9774-202ENSMUST00000192538 1392 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
Chd3B1AR17 Cacnb3-201ENSMUST00000003442 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Chd3B1AR17 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC17.37■□□□□ 0.37
Chd3B1AR17 1810062O18Rik-202ENSMUST00000128848 745 ntTSL 3 BASIC17.37■□□□□ 0.37
Chd3B1AR17 Rab28-205ENSMUST00000202913 863 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Chd3B1AR17 Gpr180-201ENSMUST00000022728 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Chd3B1AR17 Mrm1-201ENSMUST00000018549 2477 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Chd3B1AR17 AC124392.1-201ENSMUST00000225172 5324 ntBASIC17.37■□□□□ 0.37
Chd3B1AR17 4430402I18Rik-205ENSMUST00000162110 1559 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
Chd3B1AR17 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 23.1 ms