Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Rfx3P48381 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Rfx3P48381 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Rfx3P48381 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC21.77■■□□□ 1.08
Rfx3P48381 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Rfx3P48381 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Rfx3P48381 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Rfx3P48381 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Rfx3P48381 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
Rfx3P48381 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Rfx3P48381 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Rfx3P48381 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC21.75■■□□□ 1.07
Rfx3P48381 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Rfx3P48381 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Rfx3P48381 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC21.74■■□□□ 1.07
Rfx3P48381 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Rfx3P48381 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Rfx3P48381 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Rfx3P48381 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC21.72■■□□□ 1.07
Rfx3P48381 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
Rfx3P48381 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Rfx3P48381 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Rfx3P48381 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Rfx3P48381 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Rfx3P48381 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
Rfx3P48381 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
Rfx3P48381 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Rfx3P48381 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Rfx3P48381 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Rfx3P48381 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Rfx3P48381 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
Rfx3P48381 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC21.68■■□□□ 1.06
Rfx3P48381 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Rfx3P48381 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC21.68■■□□□ 1.06
Rfx3P48381 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Rfx3P48381 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Rfx3P48381 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Rfx3P48381 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Rfx3P48381 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Rfx3P48381 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
Rfx3P48381 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
Rfx3P48381 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
Rfx3P48381 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Rfx3P48381 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC21.64■■□□□ 1.06
Rfx3P48381 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC21.64■■□□□ 1.06
Rfx3P48381 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Rfx3P48381 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Rfx3P48381 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Rfx3P48381 Zfp131-205ENSMUST00000223812 663 ntBASIC21.61■■□□□ 1.05
Rfx3P48381 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Rfx3P48381 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC21.6■■□□□ 1.05
Rfx3P48381 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Rfx3P48381 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
Rfx3P48381 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Rfx3P48381 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.04
Rfx3P48381 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Rfx3P48381 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Rfx3P48381 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Rfx3P48381 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Rfx3P48381 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
Rfx3P48381 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Rfx3P48381 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Rfx3P48381 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
Rfx3P48381 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Rfx3P48381 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Rfx3P48381 Cdc14b-207ENSMUST00000221634 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
Rfx3P48381 E030037K01Rik-201ENSMUST00000180928 1756 ntBASIC21.53■■□□□ 1.04
Rfx3P48381 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
Rfx3P48381 Eif4ebp1-201ENSMUST00000033880 1997 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Rfx3P48381 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC21.51■■□□□ 1.03
Rfx3P48381 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC21.5■■□□□ 1.03
Rfx3P48381 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Rfx3P48381 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
Rfx3P48381 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Rfx3P48381 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Rfx3P48381 Tdp2-203ENSMUST00000223804 1136 ntBASIC21.48■■□□□ 1.03
Rfx3P48381 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Rfx3P48381 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Rfx3P48381 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
Rfx3P48381 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Rfx3P48381 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Rfx3P48381 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC21.47■■□□□ 1.03
Rfx3P48381 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Rfx3P48381 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Rfx3P48381 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Rfx3P48381 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC21.46■■□□□ 1.03
Rfx3P48381 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC21.46■■□□□ 1.03
Rfx3P48381 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.03
Rfx3P48381 Odc1-201ENSMUST00000171737 2208 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Rfx3P48381 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC21.45■■□□□ 1.02
Rfx3P48381 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
Rfx3P48381 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Rfx3P48381 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
Rfx3P48381 Rtn4r-201ENSMUST00000059589 1938 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Rfx3P48381 Mpp6-202ENSMUST00000036236 2161 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Rfx3P48381 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC21.43■■□□□ 1.02
Rfx3P48381 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Rfx3P48381 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Rfx3P48381 Zbtb12-201ENSMUST00000052778 1858 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Rfx3P48381 Slc35a3-202ENSMUST00000120120 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Retrieved 100 of 76,532 protein–RNA pairs in 17.7 ms