Protein–RNA interactions for Protein: Q6P9L4

Usp49, Ubiquitin carboxyl-terminal hydrolase 49, mousemouse

Predictions only

Length 685 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp49Q6P9L4 Scgb2b27-201ENSMUST00000085620 512 ntAPPRIS P3 TSL 1 (best) BASIC6.08□□□□□ -1.44
Usp49Q6P9L4 Clec9a-201ENSMUST00000058352 3293 ntAPPRIS ALT2 TSL 1 (best) BASIC6.08□□□□□ -1.44
Usp49Q6P9L4 Cpb2-201ENSMUST00000022576 1477 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
Usp49Q6P9L4 Pcdh15-222ENSMUST00000147189 6806 ntAPPRIS ALT2 TSL 1 (best) BASIC6.08□□□□□ -1.44
Usp49Q6P9L4 Ryr3-204ENSMUST00000134358 14958 ntAPPRIS ALT2 TSL 5 BASIC6.07□□□□□ -1.44
Usp49Q6P9L4 Gm43857-201ENSMUST00000200343 3079 ntBASIC6.07□□□□□ -1.44
Usp49Q6P9L4 2900079G21Rik-204ENSMUST00000163302 2764 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
Usp49Q6P9L4 Trp53bp1-202ENSMUST00000110648 9621 ntAPPRIS P3 TSL 5 BASIC6.07□□□□□ -1.44
Usp49Q6P9L4 Usp29-204ENSMUST00000200535 7540 ntAPPRIS P1 TSL 5 BASIC6.07□□□□□ -1.44
Usp49Q6P9L4 Olfr497-202ENSMUST00000213521 2396 ntAPPRIS P1 TSL 3 BASIC6.07□□□□□ -1.44
Usp49Q6P9L4 Oog4-202ENSMUST00000073641 1817 ntAPPRIS ALT2 TSL 1 (best) BASIC6.07□□□□□ -1.44
Usp49Q6P9L4 Zfp37-207ENSMUST00000222748 2564 ntAPPRIS ALT2 TSL 2 BASIC6.07□□□□□ -1.44
Usp49Q6P9L4 AC154640.4-201ENSMUST00000226647 4640 ntBASIC6.07□□□□□ -1.44
Usp49Q6P9L4 Cntn4-201ENSMUST00000079416 2844 ntTSL 5 BASIC6.07□□□□□ -1.44
Usp49Q6P9L4 Gm11032-201ENSMUST00000109941 102 ntAPPRIS P1 TSL 5 BASIC6.07□□□□□ -1.44
Usp49Q6P9L4 Cd200r3-204ENSMUST00000114612 731 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
Usp49Q6P9L4 Gm12465-201ENSMUST00000118591 300 ntBASIC6.07□□□□□ -1.44
Usp49Q6P9L4 Gm11233-201ENSMUST00000122357 634 ntBASIC6.07□□□□□ -1.44
Usp49Q6P9L4 Klra13-ps-201ENSMUST00000125813 802 ntBASIC6.07□□□□□ -1.44
Usp49Q6P9L4 Gm12472-201ENSMUST00000153232 1140 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
Usp49Q6P9L4 Gm22214-201ENSMUST00000157563 172 ntBASIC6.07□□□□□ -1.44
Usp49Q6P9L4 Gm24236-201ENSMUST00000157794 134 ntBASIC6.07□□□□□ -1.44
Usp49Q6P9L4 Gm25489-201ENSMUST00000158727 141 ntBASIC6.07□□□□□ -1.44
Usp49Q6P9L4 Vmn1r5-201ENSMUST00000164307 1056 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
Usp49Q6P9L4 Cd200r3-210ENSMUST00000171779 1223 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
Usp49Q6P9L4 Pkib-209ENSMUST00000177325 540 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
Usp49Q6P9L4 1700028M03Rik-201ENSMUST00000185938 476 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
Usp49Q6P9L4 Gm28353-201ENSMUST00000186482 570 ntBASIC6.07□□□□□ -1.44
Usp49Q6P9L4 Gm28533-201ENSMUST00000186741 570 ntBASIC6.07□□□□□ -1.44
Usp49Q6P9L4 Gm28188-201ENSMUST00000190483 236 ntBASIC6.07□□□□□ -1.44
Usp49Q6P9L4 Gm28510-201ENSMUST00000190572 928 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
Usp49Q6P9L4 Gm9317-201ENSMUST00000197055 862 ntBASIC6.07□□□□□ -1.44
Usp49Q6P9L4 Gm42814-201ENSMUST00000199370 460 ntBASIC6.07□□□□□ -1.44
Usp49Q6P9L4 Gm29815-201ENSMUST00000202418 178 ntBASIC6.07□□□□□ -1.44
Usp49Q6P9L4 Olfr519-202ENSMUST00000202706 945 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
Usp49Q6P9L4 Gm8703-201ENSMUST00000203793 730 ntBASIC6.07□□□□□ -1.44
Usp49Q6P9L4 AC122332.1-201ENSMUST00000214384 285 ntBASIC6.07□□□□□ -1.44
Usp49Q6P9L4 CT485612.3-201ENSMUST00000222179 408 ntBASIC6.07□□□□□ -1.44
Usp49Q6P9L4 AC079644.3-201ENSMUST00000222452 357 ntBASIC6.07□□□□□ -1.44
Usp49Q6P9L4 Gm18247-201ENSMUST00000222937 601 ntBASIC6.07□□□□□ -1.44
Usp49Q6P9L4 Gm9202-201ENSMUST00000223036 437 ntBASIC6.07□□□□□ -1.44
Usp49Q6P9L4 AC117949.2-201ENSMUST00000225900 584 ntBASIC6.07□□□□□ -1.44
Usp49Q6P9L4 AC123665.4-201ENSMUST00000228790 249 ntBASIC6.07□□□□□ -1.44
Usp49Q6P9L4 Cst12-201ENSMUST00000028932 644 ntAPPRIS ALT2 TSL 1 (best) BASIC6.07□□□□□ -1.44
Usp49Q6P9L4 Cd200r3-201ENSMUST00000048479 986 ntAPPRIS ALT2 TSL 1 (best) BASIC6.07□□□□□ -1.44
Usp49Q6P9L4 Cd200r3-202ENSMUST00000077178 767 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
Usp49Q6P9L4 Defa17-201ENSMUST00000079528 397 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
Usp49Q6P9L4 Gm23330-201ENSMUST00000082660 164 ntBASIC6.07□□□□□ -1.44
Usp49Q6P9L4 Mir337-201ENSMUST00000083592 97 ntBASIC6.07□□□□□ -1.44
Usp49Q6P9L4 Tas2r140-201ENSMUST00000095391 1000 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
Usp49Q6P9L4 Olfr592-201ENSMUST00000098207 939 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
Usp49Q6P9L4 AC158981.2-201ENSMUST00000227565 1537 ntBASIC6.07□□□□□ -1.44
Usp49Q6P9L4 Serpinb5-202ENSMUST00000112729 2531 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
Usp49Q6P9L4 Sox6-204ENSMUST00000166877 8079 ntAPPRIS ALT2 TSL 5 BASIC6.07□□□□□ -1.44
Usp49Q6P9L4 Gm26835-201ENSMUST00000181888 3274 ntTSL 5 BASIC6.07□□□□□ -1.44
Usp49Q6P9L4 Zfp871-201ENSMUST00000057501 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC6.07□□□□□ -1.44
Usp49Q6P9L4 Gm19035-201ENSMUST00000193299 1742 ntBASIC6.07□□□□□ -1.44
Usp49Q6P9L4 Csde1-215ENSMUST00000199420 4185 ntAPPRIS ALT2 TSL 5 BASIC6.07□□□□□ -1.44
Usp49Q6P9L4 Pls3-202ENSMUST00000114057 3160 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
Usp49Q6P9L4 Gm9577-201ENSMUST00000174655 2620 ntBASIC6.07□□□□□ -1.44
Usp49Q6P9L4 5430403G16Rik-201ENSMUST00000092720 3341 ntAPPRIS P1 TSL 5 BASIC6.07□□□□□ -1.44
Usp49Q6P9L4 Cx3cr1-201ENSMUST00000064165 3753 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
Usp49Q6P9L4 Rab3c-201ENSMUST00000167824 8444 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
Usp49Q6P9L4 Fam107b-209ENSMUST00000226435 3602 ntBASIC6.06□□□□□ -1.44
Usp49Q6P9L4 Gm37779-201ENSMUST00000194221 3380 ntBASIC6.06□□□□□ -1.44
Usp49Q6P9L4 Vmn1r6-202ENSMUST00000226689 8453 ntAPPRIS P2 BASIC6.06□□□□□ -1.44
Usp49Q6P9L4 Gm44667-201ENSMUST00000207632 3337 ntBASIC6.06□□□□□ -1.44
Usp49Q6P9L4 Psd3-206ENSMUST00000120071 9203 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
Usp49Q6P9L4 Ros1-202ENSMUST00000218452 6960 ntAPPRIS ALT2 TSL 5 BASIC6.06□□□□□ -1.44
Usp49Q6P9L4 Olfr51-202ENSMUST00000213415 2819 ntAPPRIS P1 TSL 5 BASIC6.06□□□□□ -1.44
Usp49Q6P9L4 Atad2-208ENSMUST00000228783 3472 ntAPPRIS ALT2 BASIC6.06□□□□□ -1.44
Usp49Q6P9L4 Ankrd49-202ENSMUST00000214456 3207 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
Usp49Q6P9L4 Lrrc69-202ENSMUST00000108276 1210 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
Usp49Q6P9L4 Hikeshi-203ENSMUST00000117354 297 ntTSL 2 BASIC6.06□□□□□ -1.44
Usp49Q6P9L4 Gm14220-201ENSMUST00000118114 449 ntBASIC6.06□□□□□ -1.44
Usp49Q6P9L4 Gm12222-201ENSMUST00000121368 260 ntBASIC6.06□□□□□ -1.44
Usp49Q6P9L4 Gm11659-201ENSMUST00000137561 466 ntTSL 3 BASIC6.06□□□□□ -1.44
Usp49Q6P9L4 Gm14223-201ENSMUST00000146060 517 ntTSL 3 BASIC6.06□□□□□ -1.44
Usp49Q6P9L4 Gm24216-201ENSMUST00000158259 117 ntBASIC6.06□□□□□ -1.44
Usp49Q6P9L4 Lcor-202ENSMUST00000163929 4663 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
Usp49Q6P9L4 Mir6412-201ENSMUST00000184477 97 ntBASIC6.06□□□□□ -1.44
Usp49Q6P9L4 Gm28803-201ENSMUST00000190385 764 ntBASIC6.06□□□□□ -1.44
Usp49Q6P9L4 Gm38283-201ENSMUST00000193041 695 ntBASIC6.06□□□□□ -1.44
Usp49Q6P9L4 Vmn1r-ps5-201ENSMUST00000202963 931 ntBASIC6.06□□□□□ -1.44
Usp49Q6P9L4 Gm2691-201ENSMUST00000203205 901 ntBASIC6.06□□□□□ -1.44
Usp49Q6P9L4 Gm19921-201ENSMUST00000210505 703 ntBASIC6.06□□□□□ -1.44
Usp49Q6P9L4 Olfr1059-ps1-201ENSMUST00000215214 586 ntBASIC6.06□□□□□ -1.44
Usp49Q6P9L4 AC158631.2-201ENSMUST00000219999 478 ntBASIC6.06□□□□□ -1.44
Usp49Q6P9L4 AC164629.1-201ENSMUST00000220250 1113 ntBASIC6.06□□□□□ -1.44
Usp49Q6P9L4 AC116724.1-201ENSMUST00000227900 972 ntBASIC6.06□□□□□ -1.44
Usp49Q6P9L4 Olfr161-201ENSMUST00000061541 942 ntAPPRIS P1 BASIC6.06□□□□□ -1.44
Usp49Q6P9L4 Mir129-1-201ENSMUST00000083535 73 ntBASIC6.06□□□□□ -1.44
Usp49Q6P9L4 1700017N19Rik-206ENSMUST00000190386 1483 ntTSL 5 BASIC6.06□□□□□ -1.44
Usp49Q6P9L4 Vps13c-201ENSMUST00000077879 11527 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
Usp49Q6P9L4 Usp46-202ENSMUST00000119154 4738 ntTSL 5 BASIC6.06□□□□□ -1.44
Usp49Q6P9L4 Phospho2-206ENSMUST00000180290 3267 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
Usp49Q6P9L4 Il31ra-201ENSMUST00000051756 3680 ntAPPRIS P2 TSL 1 (best) BASIC6.06□□□□□ -1.44
Usp49Q6P9L4 Gm43845-201ENSMUST00000202462 1820 ntBASIC6.06□□□□□ -1.44
Usp49Q6P9L4 Ttc39d-201ENSMUST00000053168 2022 ntAPPRIS P1 BASIC6.06□□□□□ -1.44
Usp49Q6P9L4 Gm14886-201ENSMUST00000117208 2629 ntBASIC6.06□□□□□ -1.44
Retrieved 100 of 76,532 protein–RNA pairs in 74.8 ms