Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 4930421C12Rik-201ENSMUST00000200814 1574 ntBASIC6.22□□□□□ -1.41
Smc1aQ9CU62 Gm20756-202ENSMUST00000201324 1565 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
Smc1aQ9CU62 Il31ra-201ENSMUST00000051756 3680 ntAPPRIS P2 TSL 1 (best) BASIC6.22□□□□□ -1.41
Smc1aQ9CU62 Malrd1-201ENSMUST00000146205 6738 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
Smc1aQ9CU62 Gm37470-201ENSMUST00000193378 2798 ntBASIC6.22□□□□□ -1.41
Smc1aQ9CU62 Ms4a13-202ENSMUST00000188464 1301 ntAPPRIS ALT2 TSL 1 (best) BASIC6.22□□□□□ -1.41
Smc1aQ9CU62 Mecom-204ENSMUST00000166001 2914 ntAPPRIS ALT2 TSL 1 (best) BASIC6.22□□□□□ -1.41
Smc1aQ9CU62 Zbed4-ps1-201ENSMUST00000186734 3466 ntBASIC6.22□□□□□ -1.41
Smc1aQ9CU62 Zfp229-203ENSMUST00000182603 4315 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.41
Smc1aQ9CU62 Gm26791-201ENSMUST00000180942 1605 ntTSL 1 (best) BASIC6.21□□□□□ -1.41
Smc1aQ9CU62 Vmn1r36-201ENSMUST00000226142 1770 ntAPPRIS ALT2 BASIC6.21□□□□□ -1.41
Smc1aQ9CU62 Gm37132-201ENSMUST00000195553 2238 ntBASIC6.21□□□□□ -1.42
Smc1aQ9CU62 Chil6-201ENSMUST00000029510 1668 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
Smc1aQ9CU62 Dsc1-201ENSMUST00000038710 3775 ntAPPRIS P2 TSL 1 (best) BASIC6.21□□□□□ -1.42
Smc1aQ9CU62 Ugt2b35-201ENSMUST00000031186 3359 ntAPPRIS P1 TSL 5 BASIC6.21□□□□□ -1.42
Smc1aQ9CU62 Gm15531-201ENSMUST00000118062 252 ntBASIC6.21□□□□□ -1.42
Smc1aQ9CU62 Gm11804-201ENSMUST00000121663 468 ntBASIC6.21□□□□□ -1.42
Smc1aQ9CU62 4933401B06Rik-201ENSMUST00000139758 1155 ntBASIC6.21□□□□□ -1.42
Smc1aQ9CU62 Crem-236ENSMUST00000154715 1167 ntTSL 5 BASIC6.21□□□□□ -1.42
Smc1aQ9CU62 Gm25826-201ENSMUST00000157090 137 ntBASIC6.21□□□□□ -1.42
Smc1aQ9CU62 Gm26086-201ENSMUST00000157902 263 ntBASIC6.21□□□□□ -1.42
Smc1aQ9CU62 Vmn1r-ps60-201ENSMUST00000173467 852 ntBASIC6.21□□□□□ -1.42
Smc1aQ9CU62 Gm20397-201ENSMUST00000174520 362 ntBASIC6.21□□□□□ -1.42
Smc1aQ9CU62 Mir3080-201ENSMUST00000175010 79 ntBASIC6.21□□□□□ -1.42
Smc1aQ9CU62 Mir3090-201ENSMUST00000175597 87 ntBASIC6.21□□□□□ -1.42
Smc1aQ9CU62 Vmn1r10-201ENSMUST00000176073 936 ntAPPRIS P1 BASIC6.21□□□□□ -1.42
Smc1aQ9CU62 2010005H15Rik-202ENSMUST00000187183 639 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
Smc1aQ9CU62 AV026068-209ENSMUST00000189143 517 ntTSL 3 BASIC6.21□□□□□ -1.42
Smc1aQ9CU62 Gm28510-201ENSMUST00000190572 928 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
Smc1aQ9CU62 Gm45169-201ENSMUST00000205717 639 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
Smc1aQ9CU62 Gm33248-202ENSMUST00000206954 486 ntTSL 5 BASIC6.21□□□□□ -1.42
Smc1aQ9CU62 Gm44992-209ENSMUST00000209680 1083 ntTSL 5 BASIC6.21□□□□□ -1.42
Smc1aQ9CU62 BC024386-203ENSMUST00000209817 825 ntTSL 5 BASIC6.21□□□□□ -1.42
Smc1aQ9CU62 Gm45789-201ENSMUST00000213038 364 ntBASIC6.21□□□□□ -1.42
Smc1aQ9CU62 Olfr1134-203ENSMUST00000213939 1015 ntAPPRIS P1 BASIC6.21□□□□□ -1.42
Smc1aQ9CU62 AC124445.1-201ENSMUST00000218613 452 ntBASIC6.21□□□□□ -1.42
Smc1aQ9CU62 Pln-204ENSMUST00000219491 771 ntAPPRIS P1 TSL 2 BASIC6.21□□□□□ -1.42
Smc1aQ9CU62 Spata9-201ENSMUST00000022081 1057 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
Smc1aQ9CU62 AC117797.1-201ENSMUST00000223977 695 ntBASIC6.21□□□□□ -1.42
Smc1aQ9CU62 AC124408.2-201ENSMUST00000228168 645 ntBASIC6.21□□□□□ -1.42
Smc1aQ9CU62 Defa17-201ENSMUST00000079528 397 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
Smc1aQ9CU62 Gm156-201ENSMUST00000095409 682 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
Smc1aQ9CU62 Olfr984-203ENSMUST00000214856 5025 ntAPPRIS P1 TSL 5 BASIC6.21□□□□□ -1.42
Smc1aQ9CU62 AC121942.1-201ENSMUST00000224459 2891 ntBASIC6.21□□□□□ -1.42
Smc1aQ9CU62 Gm21093-201ENSMUST00000084677 1710 ntAPPRIS P1 BASIC6.21□□□□□ -1.42
Smc1aQ9CU62 9230109A22Rik-202ENSMUST00000228644 1853 ntBASIC6.21□□□□□ -1.42
Smc1aQ9CU62 Ptprq-201ENSMUST00000050702 7393 ntAPPRIS P1 TSL 2 BASIC6.21□□□□□ -1.42
Smc1aQ9CU62 Nipal1-201ENSMUST00000087212 4206 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
Smc1aQ9CU62 Ceacam1-201ENSMUST00000098666 3656 ntAPPRIS ALT2 TSL 1 (best) BASIC6.21□□□□□ -1.42
Smc1aQ9CU62 Gm42905-201ENSMUST00000196237 1611 ntBASIC6.21□□□□□ -1.42
Smc1aQ9CU62 Gm28240-201ENSMUST00000187560 2053 ntBASIC6.21□□□□□ -1.42
Smc1aQ9CU62 Olfr906-202ENSMUST00000214344 3775 ntAPPRIS P1 TSL 3 BASIC6.2□□□□□ -1.42
Smc1aQ9CU62 Smarca2-203ENSMUST00000112637 1962 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
Smc1aQ9CU62 AC117608.2-201ENSMUST00000224124 1363 ntBASIC6.2□□□□□ -1.42
Smc1aQ9CU62 Olfr586-204ENSMUST00000215304 6169 ntAPPRIS ALT2 TSL 5 BASIC6.2□□□□□ -1.42
Smc1aQ9CU62 Lama2-207ENSMUST00000189575 4244 ntTSL 5 BASIC6.2□□□□□ -1.42
Smc1aQ9CU62 Gm3978-201ENSMUST00000163406 2512 ntBASIC6.2□□□□□ -1.42
Smc1aQ9CU62 AC159193.1-201ENSMUST00000222872 2517 ntBASIC6.2□□□□□ -1.42
Smc1aQ9CU62 Cfap61-207ENSMUST00000138774 3308 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
Smc1aQ9CU62 Cldn34b4-201ENSMUST00000101419 1103 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
Smc1aQ9CU62 Igkv8-18-201ENSMUST00000103390 395 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
Smc1aQ9CU62 Olfr1146-ps1-201ENSMUST00000117180 943 ntBASIC6.2□□□□□ -1.42
Smc1aQ9CU62 Gm16260-201ENSMUST00000155141 304 ntBASIC6.2□□□□□ -1.42
Smc1aQ9CU62 Gm15647-201ENSMUST00000160178 691 ntTSL 3 BASIC6.2□□□□□ -1.42
Smc1aQ9CU62 Gm18343-201ENSMUST00000172802 604 ntBASIC6.2□□□□□ -1.42
Smc1aQ9CU62 Rpl9-ps9-201ENSMUST00000173020 573 ntBASIC6.2□□□□□ -1.42
Smc1aQ9CU62 Gm20453-201ENSMUST00000173968 226 ntBASIC6.2□□□□□ -1.42
Smc1aQ9CU62 A730017C20Rik-206ENSMUST00000175830 731 ntAPPRIS ALT2 TSL 5 BASIC6.2□□□□□ -1.42
Smc1aQ9CU62 Gm8604-201ENSMUST00000183150 965 ntBASIC6.2□□□□□ -1.42
Smc1aQ9CU62 Gm8282-201ENSMUST00000187559 483 ntBASIC6.2□□□□□ -1.42
Smc1aQ9CU62 Gm2367-201ENSMUST00000192374 472 ntBASIC6.2□□□□□ -1.42
Smc1aQ9CU62 Gm38670-201ENSMUST00000199248 77 ntBASIC6.2□□□□□ -1.42
Smc1aQ9CU62 Gm45820-201ENSMUST00000212068 362 ntTSL 3 BASIC6.2□□□□□ -1.42
Smc1aQ9CU62 Gm11427-204ENSMUST00000216233 999 ntTSL 5 BASIC6.2□□□□□ -1.42
Smc1aQ9CU62 Gm30313-201ENSMUST00000216806 597 ntTSL 3 BASIC6.2□□□□□ -1.42
Smc1aQ9CU62 AC133203.2-201ENSMUST00000226709 464 ntBASIC6.2□□□□□ -1.42
Smc1aQ9CU62 Rps11-ps4-201ENSMUST00000062226 474 ntBASIC6.2□□□□□ -1.42
Smc1aQ9CU62 Gm6104-201ENSMUST00000078030 603 ntBASIC6.2□□□□□ -1.42
Smc1aQ9CU62 Gm11808-201ENSMUST00000089430 504 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
Smc1aQ9CU62 Vmn1r213-202ENSMUST00000227573 3515 ntAPPRIS ALT2 BASIC6.2□□□□□ -1.42
Smc1aQ9CU62 Orc3-202ENSMUST00000108142 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC6.2□□□□□ -1.42
Smc1aQ9CU62 Cyp2c50-201ENSMUST00000068094 1643 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
Smc1aQ9CU62 Olfr1173-201ENSMUST00000099830 2268 ntAPPRIS P1 TSL 5 BASIC6.2□□□□□ -1.42
Smc1aQ9CU62 CT009733.2-202ENSMUST00000224171 4748 ntBASIC6.2□□□□□ -1.42
Smc1aQ9CU62 Olfr328-203ENSMUST00000215717 2793 ntAPPRIS P1 TSL 5 BASIC6.2□□□□□ -1.42
Smc1aQ9CU62 Cntnap5c-201ENSMUST00000076038 3931 ntAPPRIS P1 TSL 2 BASIC6.2□□□□□ -1.42
Smc1aQ9CU62 Kcnj2-201ENSMUST00000042970 5444 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
Smc1aQ9CU62 Sgcd-202ENSMUST00000109220 2450 ntTSL 5 BASIC6.2□□□□□ -1.42
Smc1aQ9CU62 Slfn4-201ENSMUST00000000208 3958 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
Smc1aQ9CU62 Ttc37-205ENSMUST00000224386 6976 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
Smc1aQ9CU62 Gm20449-201ENSMUST00000094532 3847 ntAPPRIS P1 TSL 2 BASIC6.2□□□□□ -1.42
Smc1aQ9CU62 A330015K06Rik-202ENSMUST00000195685 2196 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
Smc1aQ9CU62 Olfr1166-202ENSMUST00000217575 2004 ntAPPRIS P1 TSL 5 BASIC6.2□□□□□ -1.42
Smc1aQ9CU62 Vmn2r103-201ENSMUST00000172203 2571 ntAPPRIS P1 TSL 5 BASIC6.19□□□□□ -1.42
Smc1aQ9CU62 Tor1aip2-203ENSMUST00000097526 2589 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
Smc1aQ9CU62 Iigp1-202ENSMUST00000066912 2938 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
Smc1aQ9CU62 Vmn2r34-201ENSMUST00000173459 3616 ntAPPRIS P1 TSL 5 BASIC6.19□□□□□ -1.42
Smc1aQ9CU62 Olfr250-202ENSMUST00000216168 3969 ntAPPRIS ALT2 TSL 5 BASIC6.19□□□□□ -1.42
Smc1aQ9CU62 Jade3-201ENSMUST00000043693 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC6.19□□□□□ -1.42
Smc1aQ9CU62 Ints6l-202ENSMUST00000101553 3201 ntTSL 2 BASIC6.19□□□□□ -1.42
Retrieved 100 of 76,532 protein–RNA pairs in 62.1 ms