Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Gng10-201ENSMUST00000041160 1192 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Prpf40aQ9R1C7 Bex2-201ENSMUST00000049130 903 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Prpf40aQ9R1C7 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC19.61■□□□□ 0.73
Prpf40aQ9R1C7 Gtf2h2-201ENSMUST00000066940 1065 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Prpf40aQ9R1C7 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
Prpf40aQ9R1C7 Aebp2-202ENSMUST00000087614 3727 ntAPPRIS P4 TSL 1 (best) BASIC19.61■□□□□ 0.73
Prpf40aQ9R1C7 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
Prpf40aQ9R1C7 Gnb2-204ENSMUST00000111027 1610 ntTSL 5 BASIC19.61■□□□□ 0.73
Prpf40aQ9R1C7 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Prpf40aQ9R1C7 Polr2c-201ENSMUST00000109521 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Prpf40aQ9R1C7 Rbm11-202ENSMUST00000114249 2750 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
Prpf40aQ9R1C7 Tle4-201ENSMUST00000052011 4555 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Prpf40aQ9R1C7 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Prpf40aQ9R1C7 Cyp26c1-201ENSMUST00000073391 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Prpf40aQ9R1C7 Dlg1-205ENSMUST00000115201 3248 ntTSL 5 BASIC19.6■□□□□ 0.73
Prpf40aQ9R1C7 Nf2-205ENSMUST00000109910 4720 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
Prpf40aQ9R1C7 Zfp219-204ENSMUST00000226522 2804 ntAPPRIS P2 BASIC19.6■□□□□ 0.73
Prpf40aQ9R1C7 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Prpf40aQ9R1C7 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
Prpf40aQ9R1C7 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Prpf40aQ9R1C7 Dtnb-222ENSMUST00000174479 3689 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Prpf40aQ9R1C7 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Prpf40aQ9R1C7 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Prpf40aQ9R1C7 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Prpf40aQ9R1C7 Gm45844-202ENSMUST00000209325 2450 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Prpf40aQ9R1C7 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Prpf40aQ9R1C7 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Prpf40aQ9R1C7 Edem1-201ENSMUST00000089162 5817 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Prpf40aQ9R1C7 Dbnl-203ENSMUST00000109845 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Prpf40aQ9R1C7 Coq5-201ENSMUST00000040421 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Prpf40aQ9R1C7 Rrp9-201ENSMUST00000047721 1586 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Prpf40aQ9R1C7 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Prpf40aQ9R1C7 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC19.59■□□□□ 0.73
Prpf40aQ9R1C7 Gm9954-202ENSMUST00000198686 4725 ntBASIC19.59■□□□□ 0.73
Prpf40aQ9R1C7 Tsc22d1-214ENSMUST00000177207 1476 ntTSL 3 BASIC19.59■□□□□ 0.73
Prpf40aQ9R1C7 Igdcc4-205ENSMUST00000213533 6220 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
Prpf40aQ9R1C7 Igdcc4-201ENSMUST00000035499 6223 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.73
Prpf40aQ9R1C7 2700046G09Rik-201ENSMUST00000181612 1641 ntTSL 2 BASIC19.58■□□□□ 0.73
Prpf40aQ9R1C7 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
Prpf40aQ9R1C7 2810004N23Rik-201ENSMUST00000034465 2340 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Prpf40aQ9R1C7 Gm2399-201ENSMUST00000104944 225 ntBASIC19.58■□□□□ 0.72
Prpf40aQ9R1C7 4931413I07Rik-201ENSMUST00000173637 764 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Prpf40aQ9R1C7 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
Prpf40aQ9R1C7 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Prpf40aQ9R1C7 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Prpf40aQ9R1C7 Atxn7-203ENSMUST00000223880 2946 ntAPPRIS P2 BASIC19.58■□□□□ 0.72
Prpf40aQ9R1C7 Iscu-202ENSMUST00000112311 1395 ntTSL 2 BASIC19.57■□□□□ 0.72
Prpf40aQ9R1C7 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Prpf40aQ9R1C7 Keap1-204ENSMUST00000193982 2163 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
Prpf40aQ9R1C7 Gm42900-201ENSMUST00000197184 2167 ntBASIC19.57■□□□□ 0.72
Prpf40aQ9R1C7 Mex3a-201ENSMUST00000172699 5778 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
Prpf40aQ9R1C7 Mtcl1-202ENSMUST00000097291 7274 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
Prpf40aQ9R1C7 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Prpf40aQ9R1C7 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC19.57■□□□□ 0.72
Prpf40aQ9R1C7 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC19.57■□□□□ 0.72
Prpf40aQ9R1C7 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
Prpf40aQ9R1C7 Tmem145-202ENSMUST00000119703 1781 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
Prpf40aQ9R1C7 Gm26884-201ENSMUST00000181207 3074 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Prpf40aQ9R1C7 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Prpf40aQ9R1C7 AC163637.2-201ENSMUST00000213826 1945 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
Prpf40aQ9R1C7 AL591207.1-203ENSMUST00000222401 1380 ntTSL 5 BASIC19.57■□□□□ 0.72
Prpf40aQ9R1C7 Plxnd1-201ENSMUST00000015511 6907 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Prpf40aQ9R1C7 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC19.56■□□□□ 0.72
Prpf40aQ9R1C7 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC19.56■□□□□ 0.72
Prpf40aQ9R1C7 Dnajc19-204ENSMUST00000120805 551 ntTSL 2 BASIC19.56■□□□□ 0.72
Prpf40aQ9R1C7 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC19.56■□□□□ 0.72
Prpf40aQ9R1C7 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
Prpf40aQ9R1C7 Spr-202ENSMUST00000174286 775 ntTSL 2 BASIC19.56■□□□□ 0.72
Prpf40aQ9R1C7 AC167978.1-201ENSMUST00000182488 456 ntTSL 3 BASIC19.56■□□□□ 0.72
Prpf40aQ9R1C7 Tmem42-202ENSMUST00000213514 631 ntTSL 3 BASIC19.56■□□□□ 0.72
Prpf40aQ9R1C7 Gpr137b-ps-203ENSMUST00000220758 1942 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Prpf40aQ9R1C7 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Prpf40aQ9R1C7 Tfdp2-209ENSMUST00000188750 1713 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
Prpf40aQ9R1C7 Ddx39b-201ENSMUST00000068056 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Prpf40aQ9R1C7 Tjp1-202ENSMUST00000102592 7049 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
Prpf40aQ9R1C7 Icam5-201ENSMUST00000019616 2947 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Prpf40aQ9R1C7 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC19.55■□□□□ 0.72
Prpf40aQ9R1C7 Bmp8a-202ENSMUST00000102641 1917 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
Prpf40aQ9R1C7 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Prpf40aQ9R1C7 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC19.55■□□□□ 0.72
Prpf40aQ9R1C7 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Prpf40aQ9R1C7 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC19.55■□□□□ 0.72
Prpf40aQ9R1C7 Gm2559-201ENSMUST00000201323 363 ntBASIC19.55■□□□□ 0.72
Prpf40aQ9R1C7 Gm45472-201ENSMUST00000211295 1426 ntTSL 5 BASIC19.55■□□□□ 0.72
Prpf40aQ9R1C7 D930007J09Rik-201ENSMUST00000057911 393 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
Prpf40aQ9R1C7 Prrg2-201ENSMUST00000007981 1295 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
Prpf40aQ9R1C7 Mthfd2-201ENSMUST00000005810 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Prpf40aQ9R1C7 Camkk2-211ENSMUST00000200109 2751 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
Prpf40aQ9R1C7 Ddit4-201ENSMUST00000020308 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Prpf40aQ9R1C7 Gm37811-201ENSMUST00000192416 2601 ntBASIC19.55■□□□□ 0.72
Prpf40aQ9R1C7 Slc9a5-201ENSMUST00000073149 3499 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Prpf40aQ9R1C7 Cox18-201ENSMUST00000048363 1333 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
Prpf40aQ9R1C7 Map4k5-210ENSMUST00000171211 4334 ntTSL 2 BASIC19.54■□□□□ 0.72
Prpf40aQ9R1C7 Rps14-202ENSMUST00000118551 602 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
Prpf40aQ9R1C7 2700033N17Rik-201ENSMUST00000140185 721 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Prpf40aQ9R1C7 Smim15-205ENSMUST00000225972 2097 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
Prpf40aQ9R1C7 Tmem136-202ENSMUST00000213544 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Prpf40aQ9R1C7 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
Prpf40aQ9R1C7 Nsfl1c-203ENSMUST00000103160 1369 ntTSL 5 BASIC19.54■□□□□ 0.72
Prpf40aQ9R1C7 Ergic3-201ENSMUST00000006035 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Retrieved 100 of 76,532 protein–RNA pairs in 24.6 ms