Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Gpr180-201ENSMUST00000022728 1875 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Scn11aQ9R053 Trim47-202ENSMUST00000106441 2192 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Scn11aQ9R053 Acvr1c-204ENSMUST00000112608 1497 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
Scn11aQ9R053 Mir8112-201ENSMUST00000184382 131 ntBASIC21.25■□□□□ 0.99
Scn11aQ9R053 Zfp524-203ENSMUST00000209030 1128 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
Scn11aQ9R053 Cklf-208ENSMUST00000212433 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Scn11aQ9R053 Pmpcb-201ENSMUST00000030882 1615 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Scn11aQ9R053 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
Scn11aQ9R053 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Scn11aQ9R053 Mtch2-205ENSMUST00000136872 2596 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Scn11aQ9R053 Tagln-201ENSMUST00000034590 1595 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Scn11aQ9R053 Ing4-205ENSMUST00000140131 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Scn11aQ9R053 Mmp23-201ENSMUST00000030937 1434 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Scn11aQ9R053 Mpdu1-201ENSMUST00000018905 1321 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Scn11aQ9R053 Gtf3a-204ENSMUST00000146511 1298 ntAPPRIS P5 TSL 1 (best) BASIC21.24■□□□□ 0.99
Scn11aQ9R053 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Scn11aQ9R053 Gm37025-201ENSMUST00000195159 829 ntBASIC21.24■□□□□ 0.99
Scn11aQ9R053 Timm8a2-201ENSMUST00000045976 913 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Scn11aQ9R053 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC21.24■□□□□ 0.99
Scn11aQ9R053 Hpn-202ENSMUST00000108102 1830 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Scn11aQ9R053 Rab3ip-201ENSMUST00000020375 2690 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Scn11aQ9R053 Foxj1-201ENSMUST00000036215 2623 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Scn11aQ9R053 Pigu-201ENSMUST00000077626 1636 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Scn11aQ9R053 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC21.24■□□□□ 0.99
Scn11aQ9R053 AC134329.2-201ENSMUST00000217897 428 ntBASIC21.23■□□□□ 0.99
Scn11aQ9R053 AC130711.1-201ENSMUST00000224277 906 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
Scn11aQ9R053 Olfr464-201ENSMUST00000074874 1084 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
Scn11aQ9R053 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Scn11aQ9R053 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Scn11aQ9R053 Camk2b-202ENSMUST00000019133 2223 ntTSL 5 BASIC21.23■□□□□ 0.99
Scn11aQ9R053 Trib3-201ENSMUST00000040312 2026 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Scn11aQ9R053 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Scn11aQ9R053 Idnk-204ENSMUST00000226010 1898 ntBASIC21.23■□□□□ 0.99
Scn11aQ9R053 Nptn-212ENSMUST00000177292 1390 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
Scn11aQ9R053 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Scn11aQ9R053 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Scn11aQ9R053 Auh-201ENSMUST00000021913 1320 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Scn11aQ9R053 Pcyox1-206ENSMUST00000204116 546 ntTSL 5 BASIC21.23■□□□□ 0.99
Scn11aQ9R053 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Scn11aQ9R053 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Scn11aQ9R053 Amdhd1-201ENSMUST00000016034 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Scn11aQ9R053 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Scn11aQ9R053 Dtwd2-201ENSMUST00000025383 2476 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Scn11aQ9R053 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Scn11aQ9R053 Gm45058-201ENSMUST00000205810 766 ntBASIC21.22■□□□□ 0.99
Scn11aQ9R053 Grtp1-204ENSMUST00000209691 1030 ntTSL 5 BASIC21.22■□□□□ 0.99
Scn11aQ9R053 Gm7791-201ENSMUST00000219066 539 ntBASIC21.22■□□□□ 0.99
Scn11aQ9R053 Rpp25l-201ENSMUST00000038434 856 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Scn11aQ9R053 Doc2a-201ENSMUST00000064110 2538 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Scn11aQ9R053 Hspbp1-201ENSMUST00000079970 1593 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Scn11aQ9R053 Skap1-203ENSMUST00000100521 1539 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Scn11aQ9R053 Skap1-204ENSMUST00000103154 1507 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
Scn11aQ9R053 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Scn11aQ9R053 Anks1b-208ENSMUST00000182053 1649 ntTSL 5 BASIC21.21■□□□□ 0.99
Scn11aQ9R053 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Scn11aQ9R053 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Scn11aQ9R053 Tlcd2-202ENSMUST00000108435 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Scn11aQ9R053 AA467197-202ENSMUST00000110512 751 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Scn11aQ9R053 Nmnat3-203ENSMUST00000112938 848 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Scn11aQ9R053 Gm14453-201ENSMUST00000139677 553 ntTSL 3 BASIC21.21■□□□□ 0.99
Scn11aQ9R053 Krt88-201ENSMUST00000023781 903 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Scn11aQ9R053 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Scn11aQ9R053 Nck2-201ENSMUST00000086421 2772 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Scn11aQ9R053 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Scn11aQ9R053 Ptges3l-202ENSMUST00000103102 1463 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Scn11aQ9R053 Gpr162-204ENSMUST00000204667 2855 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Scn11aQ9R053 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Scn11aQ9R053 Gm38342-201ENSMUST00000195710 2980 ntBASIC21.21■□□□□ 0.99
Scn11aQ9R053 4833413E03Rik-201ENSMUST00000013706 1091 ntTSL 5 BASIC21.2■□□□□ 0.99
Scn11aQ9R053 Muc2-203ENSMUST00000179227 399 ntTSL 1 (best) BASIC21.2■□□□□ 0.99
Scn11aQ9R053 Nthl1-201ENSMUST00000047611 1080 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
Scn11aQ9R053 Dmtn-210ENSMUST00000228824 2377 ntBASIC21.2■□□□□ 0.98
Scn11aQ9R053 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Scn11aQ9R053 H2afz-207ENSMUST00000174561 810 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Scn11aQ9R053 Gm26827-201ENSMUST00000181911 148 ntTSL 5 BASIC21.2■□□□□ 0.98
Scn11aQ9R053 Lsm10-201ENSMUST00000055575 943 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Scn11aQ9R053 Vps37d-202ENSMUST00000076203 1286 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Scn11aQ9R053 Nos1ap-207ENSMUST00000161966 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Scn11aQ9R053 Aig1-201ENSMUST00000019942 1439 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Scn11aQ9R053 Gm27029-202ENSMUST00000107259 1855 ntAPPRIS P5 TSL 5 BASIC21.19■□□□□ 0.98
Scn11aQ9R053 Gm26885-201ENSMUST00000181920 1688 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Scn11aQ9R053 Nit1-202ENSMUST00000111295 1335 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
Scn11aQ9R053 Ncoa5-203ENSMUST00000122070 3117 ntTSL 5 BASIC21.19■□□□□ 0.98
Scn11aQ9R053 Gm16861-201ENSMUST00000181498 1647 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Scn11aQ9R053 Syt8-202ENSMUST00000105976 1289 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Scn11aQ9R053 Gm1673-202ENSMUST00000114382 451 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
Scn11aQ9R053 Syt8-205ENSMUST00000122393 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Scn11aQ9R053 Pdxk-ps-203ENSMUST00000183934 680 ntTSL 3 BASIC21.19■□□□□ 0.98
Scn11aQ9R053 AC154471.1-201ENSMUST00000224418 436 ntBASIC21.19■□□□□ 0.98
Scn11aQ9R053 Lmbr1-207ENSMUST00000200564 1598 ntTSL 5 BASIC21.19■□□□□ 0.98
Scn11aQ9R053 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Scn11aQ9R053 Hjurp-202ENSMUST00000065420 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Scn11aQ9R053 Creg1-202ENSMUST00000111432 2163 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Scn11aQ9R053 Ache-202ENSMUST00000085934 2176 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Scn11aQ9R053 Tmem125-201ENSMUST00000060214 1864 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
Scn11aQ9R053 Psmg4-201ENSMUST00000124996 474 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Scn11aQ9R053 A730060N03Rik-201ENSMUST00000174277 2124 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Scn11aQ9R053 Gm44771-201ENSMUST00000206975 626 ntBASIC21.18■□□□□ 0.98
Scn11aQ9R053 AC133598.3-202ENSMUST00000224219 531 ntBASIC21.18■□□□□ 0.98
Scn11aQ9R053 AC130713.1-201ENSMUST00000228853 1096 ntBASIC21.18■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 23.5 ms