Protein–RNA interactions for Protein: Q8VC31

Ccdc9, Coiled-coil domain-containing protein 9, mousemouse

Known RBP Predictions only

Length 543 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc9Q8VC31 Mir6236-201ENSMUST00000184437 123 ntBASIC21.46■■□□□ 1.03
Ccdc9Q8VC31 Gm9959-201ENSMUST00000068277 390 ntBASIC21.46■■□□□ 1.03
Ccdc9Q8VC31 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
Ccdc9Q8VC31 Txnl1-201ENSMUST00000025476 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Ccdc9Q8VC31 Nkpd1-202ENSMUST00000207576 2916 ntAPPRIS P2 TSL 5 BASIC21.46■■□□□ 1.03
Ccdc9Q8VC31 Zdhhc6-201ENSMUST00000076891 2263 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Ccdc9Q8VC31 Cactin-201ENSMUST00000050867 2715 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Ccdc9Q8VC31 Usp30-201ENSMUST00000031588 4604 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Ccdc9Q8VC31 Fbxo9-202ENSMUST00000085311 2155 ntAPPRIS ALT1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Ccdc9Q8VC31 Glis1-201ENSMUST00000046005 2906 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.03
Ccdc9Q8VC31 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.03
Ccdc9Q8VC31 Lmbr1-207ENSMUST00000200564 1598 ntTSL 5 BASIC21.45■■□□□ 1.02
Ccdc9Q8VC31 Relt-201ENSMUST00000008462 2851 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Ccdc9Q8VC31 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
Ccdc9Q8VC31 Ccdc74a-201ENSMUST00000056962 1273 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
Ccdc9Q8VC31 Parg-204ENSMUST00000164137 3013 ntTSL 5 BASIC21.45■■□□□ 1.02
Ccdc9Q8VC31 Dmtn-201ENSMUST00000022694 5418 ntAPPRIS ALT1 TSL 5 BASIC21.45■■□□□ 1.02
Ccdc9Q8VC31 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Ccdc9Q8VC31 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
Ccdc9Q8VC31 Gm3020-202ENSMUST00000167430 1933 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Ccdc9Q8VC31 Gm10409-201ENSMUST00000170123 1933 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Ccdc9Q8VC31 Gm16638-201ENSMUST00000148687 1865 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Ccdc9Q8VC31 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Ccdc9Q8VC31 Gm45102-201ENSMUST00000207427 857 ntBASIC21.44■■□□□ 1.02
Ccdc9Q8VC31 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Ccdc9Q8VC31 Tcte2-201ENSMUST00000053376 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
Ccdc9Q8VC31 Scamp3-202ENSMUST00000098941 1338 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Ccdc9Q8VC31 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC21.44■■□□□ 1.02
Ccdc9Q8VC31 Cdh24-201ENSMUST00000067784 3489 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
Ccdc9Q8VC31 Plbd2-201ENSMUST00000031597 4208 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Ccdc9Q8VC31 Mycl-201ENSMUST00000030407 3501 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Ccdc9Q8VC31 Tapt1-201ENSMUST00000055128 3513 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
Ccdc9Q8VC31 Krtap5-2-202ENSMUST00000190456 1471 ntAPPRIS P2 BASIC21.44■■□□□ 1.02
Ccdc9Q8VC31 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Ccdc9Q8VC31 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Ccdc9Q8VC31 Ipo8-201ENSMUST00000048418 5360 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Ccdc9Q8VC31 Gm16054-201ENSMUST00000139469 1819 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Ccdc9Q8VC31 Zfp367-202ENSMUST00000117241 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
Ccdc9Q8VC31 Lrch3-211ENSMUST00000170899 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
Ccdc9Q8VC31 Cdc42ep3-201ENSMUST00000068958 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Ccdc9Q8VC31 Coq5-201ENSMUST00000040421 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Ccdc9Q8VC31 Kcnq2-201ENSMUST00000016491 3067 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Ccdc9Q8VC31 Ormdl3-201ENSMUST00000052919 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Ccdc9Q8VC31 Rps24-207ENSMUST00000224568 714 ntBASIC21.43■■□□□ 1.02
Ccdc9Q8VC31 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Ccdc9Q8VC31 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Ccdc9Q8VC31 Zfp740-202ENSMUST00000119168 3932 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Ccdc9Q8VC31 Mgarp-202ENSMUST00000108046 1409 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Ccdc9Q8VC31 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC21.43■■□□□ 1.02
Ccdc9Q8VC31 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Ccdc9Q8VC31 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Ccdc9Q8VC31 St8sia5-201ENSMUST00000075290 1841 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Ccdc9Q8VC31 Negr1-203ENSMUST00000106065 1953 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Ccdc9Q8VC31 Clvs2-201ENSMUST00000019920 2717 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Ccdc9Q8VC31 Gm4425-201ENSMUST00000172838 2857 ntTSL 2 BASIC21.42■■□□□ 1.02
Ccdc9Q8VC31 Adcy2-201ENSMUST00000022013 4211 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Ccdc9Q8VC31 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC21.42■■□□□ 1.02
Ccdc9Q8VC31 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Ccdc9Q8VC31 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC21.42■■□□□ 1.02
Ccdc9Q8VC31 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC21.42■■□□□ 1.02
Ccdc9Q8VC31 Dmgdh-201ENSMUST00000048001 2992 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Ccdc9Q8VC31 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Ccdc9Q8VC31 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Ccdc9Q8VC31 Trhde-201ENSMUST00000061632 5714 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Ccdc9Q8VC31 Rhot1-201ENSMUST00000017831 3029 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
Ccdc9Q8VC31 Hr-201ENSMUST00000022691 5487 ntAPPRIS P2 TSL 1 (best) BASIC21.42■■□□□ 1.02
Ccdc9Q8VC31 Arhgef17-204ENSMUST00000209041 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
Ccdc9Q8VC31 Cnppd1-208ENSMUST00000190679 2062 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Ccdc9Q8VC31 Casc3-201ENSMUST00000017384 3963 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
Ccdc9Q8VC31 Fbxl21-203ENSMUST00000121871 1963 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Ccdc9Q8VC31 Zfp746-201ENSMUST00000073124 3651 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
Ccdc9Q8VC31 Gm16432-201ENSMUST00000094273 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Ccdc9Q8VC31 Ppard-201ENSMUST00000002320 3218 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Ccdc9Q8VC31 Tsen34-202ENSMUST00000108627 1319 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Ccdc9Q8VC31 Gm7143-201ENSMUST00000222811 859 ntBASIC21.41■■□□□ 1.02
Ccdc9Q8VC31 Asic4-201ENSMUST00000037708 2464 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
Ccdc9Q8VC31 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Ccdc9Q8VC31 Add1-204ENSMUST00000114338 4007 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
Ccdc9Q8VC31 Prdm6-201ENSMUST00000091900 2601 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
Ccdc9Q8VC31 Hdac2-202ENSMUST00000105510 3250 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Ccdc9Q8VC31 App-203ENSMUST00000226801 3299 ntAPPRIS ALT2 BASIC21.4■■□□□ 1.02
Ccdc9Q8VC31 Tex261-201ENSMUST00000014892 2984 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Ccdc9Q8VC31 Ankrd9-204ENSMUST00000140788 1451 ntAPPRIS P2 TSL 3 BASIC21.4■■□□□ 1.02
Ccdc9Q8VC31 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC21.4■■□□□ 1.02
Ccdc9Q8VC31 Nrros-201ENSMUST00000099991 2548 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
Ccdc9Q8VC31 Dynll2-202ENSMUST00000107923 2443 ntAPPRIS P1 TSL 3 BASIC21.4■■□□□ 1.02
Ccdc9Q8VC31 Gm10564-201ENSMUST00000097750 3113 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Ccdc9Q8VC31 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
Ccdc9Q8VC31 Elk4-202ENSMUST00000086556 4433 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
Ccdc9Q8VC31 Ctnna2-204ENSMUST00000160894 4162 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
Ccdc9Q8VC31 Gm9780-202ENSMUST00000184915 1394 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
Ccdc9Q8VC31 Specc1-210ENSMUST00000201723 2690 ntTSL 5 BASIC21.39■■□□□ 1.01
Ccdc9Q8VC31 Tbx3os1-206ENSMUST00000202307 1787 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
Ccdc9Q8VC31 Ache-201ENSMUST00000024099 2186 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Ccdc9Q8VC31 Eda-203ENSMUST00000113776 5105 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
Ccdc9Q8VC31 Bex4-201ENSMUST00000116527 837 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Ccdc9Q8VC31 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC21.39■■□□□ 1.01
Ccdc9Q8VC31 Zc3h15-201ENSMUST00000081591 2111 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Ccdc9Q8VC31 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
Ccdc9Q8VC31 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Retrieved 100 of 76,532 protein–RNA pairs in 43.9 ms