Protein–RNA interactions for Protein: Q8R4U6

Top1mt, DNA topoisomerase I, mitochondrial, mousemouse

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Top1mtQ8R4U6 A230050P20Rik-201ENSMUST00000043911 1683 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Top1mtQ8R4U6 Ino80e-201ENSMUST00000050833 1944 ntTSL 1 (best) BASIC21.32■■□□□ 1
Top1mtQ8R4U6 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC21.32■■□□□ 1
Top1mtQ8R4U6 Tor3a-207ENSMUST00000188964 1750 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Top1mtQ8R4U6 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Top1mtQ8R4U6 Etnk1-204ENSMUST00000205256 2647 ntTSL 1 (best) BASIC21.32■■□□□ 1
Top1mtQ8R4U6 Ngb-201ENSMUST00000021420 1616 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
Top1mtQ8R4U6 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
Top1mtQ8R4U6 Paqr3-201ENSMUST00000069453 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Top1mtQ8R4U6 Efcab11-201ENSMUST00000046485 2068 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Top1mtQ8R4U6 Lzic-201ENSMUST00000030842 1817 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Top1mtQ8R4U6 Apbb1-219ENSMUST00000191601 2690 ntAPPRIS P4 TSL 5 BASIC21.32■■□□□ 1
Top1mtQ8R4U6 Klf16-201ENSMUST00000038558 2674 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Top1mtQ8R4U6 Hspbp1-201ENSMUST00000079970 1593 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Top1mtQ8R4U6 Tsc22d1-201ENSMUST00000022587 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Top1mtQ8R4U6 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC21.31■■□□□ 1
Top1mtQ8R4U6 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC21.31■■□□□ 1
Top1mtQ8R4U6 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
Top1mtQ8R4U6 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC21.31■■□□□ 1
Top1mtQ8R4U6 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC21.31■■□□□ 1
Top1mtQ8R4U6 AC153845.2-202ENSMUST00000213372 807 ntTSL 3 BASIC21.31■■□□□ 1
Top1mtQ8R4U6 Ncoa5-203ENSMUST00000122070 3117 ntTSL 5 BASIC21.31■■□□□ 1
Top1mtQ8R4U6 Prdm8-202ENSMUST00000210477 3316 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
Top1mtQ8R4U6 Plekhf2-201ENSMUST00000054776 2977 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Top1mtQ8R4U6 Clasp2-204ENSMUST00000213663 2727 ntTSL 5 BASIC21.3■■□□□ 1
Top1mtQ8R4U6 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Top1mtQ8R4U6 Ythdf3-201ENSMUST00000108345 5102 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Top1mtQ8R4U6 Sarnp-201ENSMUST00000105230 918 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Top1mtQ8R4U6 Gm12441-201ENSMUST00000121806 588 ntBASIC21.3■■□□□ 1
Top1mtQ8R4U6 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC21.3■■□□□ 1
Top1mtQ8R4U6 Camk2b-202ENSMUST00000019133 2223 ntTSL 5 BASIC21.3■■□□□ 1
Top1mtQ8R4U6 AC108858.1-201ENSMUST00000228461 1498 ntBASIC21.3■■□□□ 1
Top1mtQ8R4U6 Fkbp5-201ENSMUST00000079413 3542 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Top1mtQ8R4U6 Fam172a-202ENSMUST00000099358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
Top1mtQ8R4U6 Diras1-201ENSMUST00000055125 2953 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Top1mtQ8R4U6 Zcchc6-207ENSMUST00000225576 2499 ntBASIC21.29■■□□□ 1
Top1mtQ8R4U6 Zfp768-201ENSMUST00000060783 2356 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
Top1mtQ8R4U6 Gpn3-201ENSMUST00000031420 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Top1mtQ8R4U6 Bmt2-201ENSMUST00000045235 4143 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
Top1mtQ8R4U6 3110082J24Rik-201ENSMUST00000127749 327 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
Top1mtQ8R4U6 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
Top1mtQ8R4U6 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC21.29■■□□□ 1
Top1mtQ8R4U6 Agbl5-215ENSMUST00000202060 3121 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
Top1mtQ8R4U6 Gm37811-201ENSMUST00000192416 2601 ntBASIC21.29■■□□□ 1
Top1mtQ8R4U6 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Top1mtQ8R4U6 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Top1mtQ8R4U6 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC21.29■■□□□ 1
Top1mtQ8R4U6 Cyp2r1-201ENSMUST00000032908 1627 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Top1mtQ8R4U6 Slc7a10-201ENSMUST00000001854 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Top1mtQ8R4U6 Sulf2-201ENSMUST00000088086 3927 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Top1mtQ8R4U6 Tmem79-201ENSMUST00000001456 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Top1mtQ8R4U6 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
Top1mtQ8R4U6 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
Top1mtQ8R4U6 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
Top1mtQ8R4U6 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
Top1mtQ8R4U6 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Top1mtQ8R4U6 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Top1mtQ8R4U6 AC167978.1-201ENSMUST00000182488 456 ntTSL 3 BASIC21.28■■□□□ 1
Top1mtQ8R4U6 Gm46218-201ENSMUST00000215448 801 ntTSL 5 BASIC21.28■■□□□ 1
Top1mtQ8R4U6 Ccnd3-215ENSMUST00000183044 2064 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Top1mtQ8R4U6 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Top1mtQ8R4U6 Fcho2-208ENSMUST00000224992 2964 ntBASIC21.28■■□□□ 1
Top1mtQ8R4U6 Chst3-202ENSMUST00000135158 6108 ntAPPRIS P2 TSL 5 BASIC21.28■■□□□ 1
Top1mtQ8R4U6 1700018L02Rik-201ENSMUST00000187897 2485 ntBASIC21.28■■□□□ 1
Top1mtQ8R4U6 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC21.28■■□□□ 1
Top1mtQ8R4U6 Csrp2-201ENSMUST00000020403 1384 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Top1mtQ8R4U6 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
Top1mtQ8R4U6 Gm11249-201ENSMUST00000117071 859 ntBASIC21.27■■□□□ 1
Top1mtQ8R4U6 Mir2861-201ENSMUST00000175539 82 ntBASIC21.27■■□□□ 1
Top1mtQ8R4U6 Gm19391-201ENSMUST00000196653 999 ntTSL 3 BASIC21.27■■□□□ 1
Top1mtQ8R4U6 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC21.27■■□□□ 1
Top1mtQ8R4U6 Park7-201ENSMUST00000030805 908 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Top1mtQ8R4U6 Yipf2-201ENSMUST00000034700 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Top1mtQ8R4U6 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Top1mtQ8R4U6 Espn-209ENSMUST00000105655 1350 ntTSL 5 BASIC21.26■□□□□ 0.99
Top1mtQ8R4U6 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC21.26■□□□□ 0.99
Top1mtQ8R4U6 Ddx59-201ENSMUST00000027655 2166 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Top1mtQ8R4U6 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC21.26■□□□□ 0.99
Top1mtQ8R4U6 Cox16-207ENSMUST00000169124 685 ntTSL 2 BASIC21.26■□□□□ 0.99
Top1mtQ8R4U6 Gm20049-201ENSMUST00000219950 730 ntBASIC21.26■□□□□ 0.99
Top1mtQ8R4U6 Tpsb2-201ENSMUST00000069616 1081 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Top1mtQ8R4U6 Odf2-211ENSMUST00000113767 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Top1mtQ8R4U6 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Top1mtQ8R4U6 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Top1mtQ8R4U6 Mfsd13a-201ENSMUST00000086969 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Top1mtQ8R4U6 Hnrnpul2-201ENSMUST00000096753 5726 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Top1mtQ8R4U6 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Top1mtQ8R4U6 Otud7a-201ENSMUST00000058476 3483 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Top1mtQ8R4U6 Hikeshi-206ENSMUST00000153470 2224 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Top1mtQ8R4U6 Agap3-205ENSMUST00000199856 2685 ntTSL 5 BASIC21.25■□□□□ 0.99
Top1mtQ8R4U6 Tmem80-201ENSMUST00000026578 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Top1mtQ8R4U6 Camta1-204ENSMUST00000105670 4961 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Top1mtQ8R4U6 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC21.25■□□□□ 0.99
Top1mtQ8R4U6 Josd2-203ENSMUST00000118493 922 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
Top1mtQ8R4U6 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC21.25■□□□□ 0.99
Top1mtQ8R4U6 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC21.25■□□□□ 0.99
Top1mtQ8R4U6 Zfp943-202ENSMUST00000153985 1598 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Top1mtQ8R4U6 Spr-202ENSMUST00000174286 775 ntTSL 2 BASIC21.25■□□□□ 0.99
Top1mtQ8R4U6 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC21.25■□□□□ 0.99
Top1mtQ8R4U6 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 23.3 ms