Protein–RNA interactions for Protein: Q8K445

Clrn1, Clarin-1, mousemouse

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clrn1Q8K445 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Clrn1Q8K445 Mrpl9-202ENSMUST00000196143 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Clrn1Q8K445 Cyp26c1-201ENSMUST00000073391 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Clrn1Q8K445 Tcf7l1-202ENSMUST00000114053 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Clrn1Q8K445 Rtcb-201ENSMUST00000001834 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Clrn1Q8K445 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Clrn1Q8K445 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
Clrn1Q8K445 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Clrn1Q8K445 Camsap3-207ENSMUST00000207712 2539 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Clrn1Q8K445 Spata2l-202ENSMUST00000166768 2707 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
Clrn1Q8K445 Nsmf-204ENSMUST00000102931 2830 ntTSL 5 BASIC16.83■□□□□ 0.29
Clrn1Q8K445 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
Clrn1Q8K445 Nptxr-203ENSMUST00000175858 4948 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.29
Clrn1Q8K445 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Clrn1Q8K445 Gm11527-201ENSMUST00000153795 596 ntTSL 2 BASIC16.83■□□□□ 0.28
Clrn1Q8K445 AC167978.1-201ENSMUST00000182488 456 ntTSL 3 BASIC16.83■□□□□ 0.28
Clrn1Q8K445 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Clrn1Q8K445 Hsbp1-201ENSMUST00000034300 1208 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Clrn1Q8K445 Zfp783-201ENSMUST00000095946 670 ntBASIC16.83■□□□□ 0.28
Clrn1Q8K445 Srcin1-203ENSMUST00000107596 7054 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Clrn1Q8K445 Pard3-209ENSMUST00000160272 5815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Clrn1Q8K445 Sft2d2-201ENSMUST00000043338 5535 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Clrn1Q8K445 Arfrp1-209ENSMUST00000170190 2483 ntTSL 5 BASIC16.82■□□□□ 0.28
Clrn1Q8K445 Vkorc1l1-203ENSMUST00000201855 4809 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Clrn1Q8K445 Gm9954-202ENSMUST00000198686 4725 ntBASIC16.82■□□□□ 0.28
Clrn1Q8K445 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
Clrn1Q8K445 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC16.82■□□□□ 0.28
Clrn1Q8K445 Krt77-201ENSMUST00000087996 2930 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Clrn1Q8K445 Gm26657-201ENSMUST00000181745 1308 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
Clrn1Q8K445 Selenos-201ENSMUST00000101801 1191 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Clrn1Q8K445 Gm12896-201ENSMUST00000118430 226 ntBASIC16.82■□□□□ 0.28
Clrn1Q8K445 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
Clrn1Q8K445 Gm38285-201ENSMUST00000192928 922 ntBASIC16.82■□□□□ 0.28
Clrn1Q8K445 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Clrn1Q8K445 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Clrn1Q8K445 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Clrn1Q8K445 Six3-203ENSMUST00000176081 3680 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Clrn1Q8K445 Oxct2b-201ENSMUST00000102648 1735 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
Clrn1Q8K445 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Clrn1Q8K445 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Clrn1Q8K445 Sdsl-201ENSMUST00000031594 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Clrn1Q8K445 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Clrn1Q8K445 Dpy19l1-203ENSMUST00000142064 3489 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
Clrn1Q8K445 Fam107a-202ENSMUST00000120411 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Clrn1Q8K445 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Clrn1Q8K445 Map4k5-210ENSMUST00000171211 4334 ntTSL 2 BASIC16.81■□□□□ 0.28
Clrn1Q8K445 Gm43042-201ENSMUST00000198676 1820 ntTSL 5 BASIC16.81■□□□□ 0.28
Clrn1Q8K445 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Clrn1Q8K445 Cpd-201ENSMUST00000021201 7946 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Clrn1Q8K445 Arhgef17-204ENSMUST00000209041 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Clrn1Q8K445 Gm42939-201ENSMUST00000197514 2205 ntBASIC16.81■□□□□ 0.28
Clrn1Q8K445 Cyp4f16-201ENSMUST00000003416 2227 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Clrn1Q8K445 Nrxn2-203ENSMUST00000113459 3285 ntTSL 2 BASIC16.81■□□□□ 0.28
Clrn1Q8K445 3110043O21Rik-203ENSMUST00000108127 3193 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Clrn1Q8K445 Agxt-201ENSMUST00000027491 1553 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Clrn1Q8K445 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Clrn1Q8K445 Mmp17-201ENSMUST00000031390 6422 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Clrn1Q8K445 Otud5-201ENSMUST00000033494 4259 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
Clrn1Q8K445 Iqsec2-202ENSMUST00000112604 5967 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Clrn1Q8K445 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Clrn1Q8K445 Rnf26-201ENSMUST00000056328 2724 ntAPPRIS P2 BASIC16.8■□□□□ 0.28
Clrn1Q8K445 Col27a1-201ENSMUST00000036300 7612 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Clrn1Q8K445 Cox18-201ENSMUST00000048363 1333 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
Clrn1Q8K445 Tbc1d2b-202ENSMUST00000128874 3473 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Clrn1Q8K445 Tomm6-202ENSMUST00000113302 749 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Clrn1Q8K445 Gm11927-201ENSMUST00000118472 759 ntBASIC16.8■□□□□ 0.28
Clrn1Q8K445 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC16.8■□□□□ 0.28
Clrn1Q8K445 Ikzf5-203ENSMUST00000128432 714 ntTSL 3 BASIC16.8■□□□□ 0.28
Clrn1Q8K445 Moap1-202ENSMUST00000178384 1284 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
Clrn1Q8K445 Crybb1-201ENSMUST00000031286 882 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Clrn1Q8K445 Edem1-201ENSMUST00000089162 5817 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Clrn1Q8K445 Noxa1-201ENSMUST00000044018 1617 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
Clrn1Q8K445 Mtmr3-202ENSMUST00000109943 5674 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Clrn1Q8K445 Trim24-201ENSMUST00000031859 4042 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
Clrn1Q8K445 Man1c1-202ENSMUST00000054096 4715 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Clrn1Q8K445 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Clrn1Q8K445 Gm16386-201ENSMUST00000181397 1423 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Clrn1Q8K445 Epn1-207ENSMUST00000208634 2127 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
Clrn1Q8K445 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Clrn1Q8K445 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Clrn1Q8K445 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Clrn1Q8K445 Col15a1-201ENSMUST00000082303 5102 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
Clrn1Q8K445 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Clrn1Q8K445 Ndufa10-201ENSMUST00000027478 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Clrn1Q8K445 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Clrn1Q8K445 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Clrn1Q8K445 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC16.79■□□□□ 0.28
Clrn1Q8K445 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC16.79■□□□□ 0.28
Clrn1Q8K445 Hebp1-201ENSMUST00000045855 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Clrn1Q8K445 Ptges3-202ENSMUST00000084771 1559 ntTSL 5 BASIC16.79■□□□□ 0.28
Clrn1Q8K445 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Clrn1Q8K445 Eif6-201ENSMUST00000029142 1500 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Clrn1Q8K445 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Clrn1Q8K445 Fam171a1-204ENSMUST00000115099 4149 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
Clrn1Q8K445 Sept9-201ENSMUST00000019038 3784 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Clrn1Q8K445 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Clrn1Q8K445 Map6-206ENSMUST00000208605 2275 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Clrn1Q8K445 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Clrn1Q8K445 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Clrn1Q8K445 Itgb5-201ENSMUST00000069345 3056 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 29.2 ms