Protein–RNA interactions for Protein: Q8CEI3

Ccdc28a, Coiled-coil domain-containing 28A, mousemouse

Predictions only

Length 192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28aQ8CEI3 Ppm1b-202ENSMUST00000112304 3262 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
Ccdc28aQ8CEI3 Acp4-203ENSMUST00000118216 1454 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
Ccdc28aQ8CEI3 Rgmb-201ENSMUST00000170578 2633 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Ccdc28aQ8CEI3 Tekt1-201ENSMUST00000021155 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Ccdc28aQ8CEI3 Igdcc4-205ENSMUST00000213533 6220 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ccdc28aQ8CEI3 Igdcc4-201ENSMUST00000035499 6223 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ccdc28aQ8CEI3 Phax-202ENSMUST00000130163 1386 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ccdc28aQ8CEI3 Il17re-201ENSMUST00000053569 1898 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Ccdc28aQ8CEI3 Plxnd1-201ENSMUST00000015511 6907 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ccdc28aQ8CEI3 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
Ccdc28aQ8CEI3 Sptssa-201ENSMUST00000056228 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ccdc28aQ8CEI3 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
Ccdc28aQ8CEI3 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC18.82■□□□□ 0.6
Ccdc28aQ8CEI3 Gclm-206ENSMUST00000178826 1002 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
Ccdc28aQ8CEI3 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC18.82■□□□□ 0.6
Ccdc28aQ8CEI3 Snap91-202ENSMUST00000074468 4336 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
Ccdc28aQ8CEI3 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ccdc28aQ8CEI3 Fkbp5-201ENSMUST00000079413 3542 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ccdc28aQ8CEI3 Cyp4f14-202ENSMUST00000179434 2207 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
Ccdc28aQ8CEI3 Cyp4f14-201ENSMUST00000054174 2207 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ccdc28aQ8CEI3 Gm43672-201ENSMUST00000199072 1731 ntBASIC18.82■□□□□ 0.6
Ccdc28aQ8CEI3 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ccdc28aQ8CEI3 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Ccdc28aQ8CEI3 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Ccdc28aQ8CEI3 Proser2-201ENSMUST00000054254 2061 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ccdc28aQ8CEI3 Map3k10-201ENSMUST00000036453 3682 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ccdc28aQ8CEI3 Gm10655-201ENSMUST00000098658 1397 ntBASIC18.81■□□□□ 0.6
Ccdc28aQ8CEI3 Il4i1-202ENSMUST00000118125 2275 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
Ccdc28aQ8CEI3 Prkar2a-201ENSMUST00000035220 4965 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ccdc28aQ8CEI3 Meg3-201ENSMUST00000124106 1988 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Ccdc28aQ8CEI3 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Ccdc28aQ8CEI3 Tjp1-202ENSMUST00000102592 7049 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ccdc28aQ8CEI3 Nrm-201ENSMUST00000074259 1466 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ccdc28aQ8CEI3 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
Ccdc28aQ8CEI3 Galnt16-204ENSMUST00000218943 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ccdc28aQ8CEI3 Hoxb4-201ENSMUST00000049241 2566 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ccdc28aQ8CEI3 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
Ccdc28aQ8CEI3 Cers1-202ENSMUST00000140239 2711 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ccdc28aQ8CEI3 Wt1-205ENSMUST00000143043 3090 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ccdc28aQ8CEI3 Apaf1-208ENSMUST00000162618 5151 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ccdc28aQ8CEI3 Col11a2-203ENSMUST00000114255 5722 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
Ccdc28aQ8CEI3 Mtcl1-201ENSMUST00000086693 7221 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ccdc28aQ8CEI3 Rps14-202ENSMUST00000118551 602 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
Ccdc28aQ8CEI3 Ypel3-210ENSMUST00000170882 1050 ntAPPRIS P1 TSL 3 BASIC18.8■□□□□ 0.6
Ccdc28aQ8CEI3 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
Ccdc28aQ8CEI3 Pop5-201ENSMUST00000081497 1025 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
Ccdc28aQ8CEI3 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ccdc28aQ8CEI3 Ecel1-201ENSMUST00000027463 2695 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ccdc28aQ8CEI3 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ccdc28aQ8CEI3 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ccdc28aQ8CEI3 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ccdc28aQ8CEI3 Car11-201ENSMUST00000003360 1585 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ccdc28aQ8CEI3 Armc10-202ENSMUST00000095495 2700 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Ccdc28aQ8CEI3 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ccdc28aQ8CEI3 Nrxn1-217ENSMUST00000174337 3021 ntTSL 5 BASIC18.79■□□□□ 0.6
Ccdc28aQ8CEI3 Sh2b2-203ENSMUST00000196397 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ccdc28aQ8CEI3 Uri1-201ENSMUST00000085513 3441 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ccdc28aQ8CEI3 Rtn4-204ENSMUST00000102842 2257 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Ccdc28aQ8CEI3 Eps8-203ENSMUST00000111878 3560 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ccdc28aQ8CEI3 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Ccdc28aQ8CEI3 Dock3-201ENSMUST00000044532 9063 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
Ccdc28aQ8CEI3 Kif7-202ENSMUST00000178048 4524 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ccdc28aQ8CEI3 Chst8-203ENSMUST00000154629 2079 ntTSL 5 BASIC18.79■□□□□ 0.6
Ccdc28aQ8CEI3 Tmed5-204ENSMUST00000118036 1045 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Ccdc28aQ8CEI3 Pigx-210ENSMUST00000155966 963 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
Ccdc28aQ8CEI3 Tmem8-201ENSMUST00000025010 3464 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ccdc28aQ8CEI3 Gpn3-201ENSMUST00000031420 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ccdc28aQ8CEI3 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ccdc28aQ8CEI3 Isyna1-201ENSMUST00000019283 1836 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ccdc28aQ8CEI3 Pard3-226ENSMUST00000162907 4682 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ccdc28aQ8CEI3 Bmi1-201ENSMUST00000028071 3594 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ccdc28aQ8CEI3 Scly-201ENSMUST00000027532 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ccdc28aQ8CEI3 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
Ccdc28aQ8CEI3 Far2os2-201ENSMUST00000149815 980 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Ccdc28aQ8CEI3 Nt5c-201ENSMUST00000021082 858 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ccdc28aQ8CEI3 Nsmf-202ENSMUST00000074422 2824 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Ccdc28aQ8CEI3 Gm16712-201ENSMUST00000181962 1960 ntTSL 2 BASIC18.78■□□□□ 0.6
Ccdc28aQ8CEI3 Lzic-201ENSMUST00000030842 1817 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ccdc28aQ8CEI3 Plppr2-201ENSMUST00000046371 2626 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Ccdc28aQ8CEI3 Ankrd9-202ENSMUST00000128353 2577 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ccdc28aQ8CEI3 2700046G09Rik-201ENSMUST00000181612 1641 ntTSL 2 BASIC18.78■□□□□ 0.6
Ccdc28aQ8CEI3 Idnk-204ENSMUST00000226010 1898 ntBASIC18.77■□□□□ 0.6
Ccdc28aQ8CEI3 Nadk2-202ENSMUST00000100789 3578 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
Ccdc28aQ8CEI3 Rnpc3-203ENSMUST00000106536 1839 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ccdc28aQ8CEI3 Gm43808-201ENSMUST00000202534 2065 ntBASIC18.77■□□□□ 0.6
Ccdc28aQ8CEI3 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Ccdc28aQ8CEI3 Gm20421-201ENSMUST00000153344 672 ntTSL 3 BASIC18.77■□□□□ 0.6
Ccdc28aQ8CEI3 Gm2011-201ENSMUST00000203124 1263 ntBASIC18.77■□□□□ 0.6
Ccdc28aQ8CEI3 Hist1h2ag-201ENSMUST00000091741 485 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
Ccdc28aQ8CEI3 Gne-202ENSMUST00000102936 2920 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ccdc28aQ8CEI3 Spc25-202ENSMUST00000112320 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ccdc28aQ8CEI3 Appl2-201ENSMUST00000020500 3020 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ccdc28aQ8CEI3 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ccdc28aQ8CEI3 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ccdc28aQ8CEI3 Kank3-201ENSMUST00000048560 2641 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ccdc28aQ8CEI3 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC18.77■□□□□ 0.59
Ccdc28aQ8CEI3 Camsap3-212ENSMUST00000208240 2572 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
Ccdc28aQ8CEI3 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ccdc28aQ8CEI3 Phtf1-203ENSMUST00000090685 3006 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Ccdc28aQ8CEI3 Pdx1-201ENSMUST00000085591 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 14.2 ms