Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
Usp40Q8BWR4 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
Usp40Q8BWR4 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC24.53■■□□□ 1.52
Usp40Q8BWR4 Prmt6-201ENSMUST00000106567 2450 ntAPPRIS P1 BASIC24.53■■□□□ 1.52
Usp40Q8BWR4 Cops8-201ENSMUST00000036153 2287 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
Usp40Q8BWR4 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
Usp40Q8BWR4 F2rl3-201ENSMUST00000058099 1751 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
Usp40Q8BWR4 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC24.52■■□□□ 1.52
Usp40Q8BWR4 Arfrp1-209ENSMUST00000170190 2483 ntTSL 5 BASIC24.52■■□□□ 1.52
Usp40Q8BWR4 Gm10418-201ENSMUST00000100943 576 ntBASIC24.52■■□□□ 1.52
Usp40Q8BWR4 Krt88-201ENSMUST00000023781 903 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
Usp40Q8BWR4 Hmg20b-201ENSMUST00000020454 1621 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
Usp40Q8BWR4 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
Usp40Q8BWR4 Tspan10-201ENSMUST00000044105 1680 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
Usp40Q8BWR4 Tha1-201ENSMUST00000033230 1770 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
Usp40Q8BWR4 4933428G20Rik-201ENSMUST00000056955 1425 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
Usp40Q8BWR4 Cdc123-201ENSMUST00000043864 1827 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
Usp40Q8BWR4 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC24.51■■□□□ 1.51
Usp40Q8BWR4 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
Usp40Q8BWR4 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
Usp40Q8BWR4 Chmp6-201ENSMUST00000026434 1557 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
Usp40Q8BWR4 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
Usp40Q8BWR4 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC24.51■■□□□ 1.51
Usp40Q8BWR4 Mthfd2-201ENSMUST00000005810 2085 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
Usp40Q8BWR4 Gm29791-202ENSMUST00000207888 369 ntBASIC24.51■■□□□ 1.51
Usp40Q8BWR4 Wdr74-202ENSMUST00000210512 1078 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
Usp40Q8BWR4 Mrpl28-201ENSMUST00000025014 1048 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
Usp40Q8BWR4 Ripply2-201ENSMUST00000058846 503 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
Usp40Q8BWR4 Olfr464-201ENSMUST00000074874 1084 ntAPPRIS P1 BASIC24.51■■□□□ 1.51
Usp40Q8BWR4 Wisp2-201ENSMUST00000029188 1719 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
Usp40Q8BWR4 4933428P19Rik-201ENSMUST00000199616 1376 ntBASIC24.51■■□□□ 1.51
Usp40Q8BWR4 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
Usp40Q8BWR4 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC24.5■■□□□ 1.51
Usp40Q8BWR4 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
Usp40Q8BWR4 Gm24841-201ENSMUST00000158676 357 ntBASIC24.5■■□□□ 1.51
Usp40Q8BWR4 Gm45058-201ENSMUST00000205810 766 ntBASIC24.5■■□□□ 1.51
Usp40Q8BWR4 Vps37d-202ENSMUST00000076203 1286 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
Usp40Q8BWR4 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC24.5■■□□□ 1.51
Usp40Q8BWR4 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC24.5■■□□□ 1.51
Usp40Q8BWR4 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC24.5■■□□□ 1.51
Usp40Q8BWR4 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC24.5■■□□□ 1.51
Usp40Q8BWR4 Cdca4-202ENSMUST00000220899 1994 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
Usp40Q8BWR4 Krt86-201ENSMUST00000088049 1960 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
Usp40Q8BWR4 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC24.5■■□□□ 1.51
Usp40Q8BWR4 Phldb3-201ENSMUST00000073325 2273 ntAPPRIS P1 TSL 5 BASIC24.5■■□□□ 1.51
Usp40Q8BWR4 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
Usp40Q8BWR4 D330023K18Rik-201ENSMUST00000133550 920 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
Usp40Q8BWR4 Gm4217-201ENSMUST00000182243 1002 ntBASIC24.49■■□□□ 1.51
Usp40Q8BWR4 Stk11-210ENSMUST00000213772 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC24.49■■□□□ 1.51
Usp40Q8BWR4 Banf1-201ENSMUST00000025762 735 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
Usp40Q8BWR4 Ahcyl1-201ENSMUST00000029490 3863 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
Usp40Q8BWR4 Fst-202ENSMUST00000223640 2612 ntBASIC24.49■■□□□ 1.51
Usp40Q8BWR4 Ppp1r1b-204ENSMUST00000137634 1343 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
Usp40Q8BWR4 Cpsf4-207ENSMUST00000162244 1387 ntAPPRIS P4 TSL 1 (best) BASIC24.49■■□□□ 1.51
Usp40Q8BWR4 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
Usp40Q8BWR4 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC24.49■■□□□ 1.51
Usp40Q8BWR4 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC24.48■■□□□ 1.51
Usp40Q8BWR4 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC24.48■■□□□ 1.51
Usp40Q8BWR4 Rogdi-207ENSMUST00000202281 1355 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
Usp40Q8BWR4 Gpr162-204ENSMUST00000204667 2855 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
Usp40Q8BWR4 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
Usp40Q8BWR4 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC24.48■■□□□ 1.51
Usp40Q8BWR4 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
Usp40Q8BWR4 Noxa1-201ENSMUST00000044018 1617 ntAPPRIS P3 TSL 1 (best) BASIC24.48■■□□□ 1.51
Usp40Q8BWR4 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC24.48■■□□□ 1.51
Usp40Q8BWR4 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC24.48■■□□□ 1.51
Usp40Q8BWR4 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC24.47■■□□□ 1.51
Usp40Q8BWR4 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC24.47■■□□□ 1.51
Usp40Q8BWR4 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC24.47■■□□□ 1.51
Usp40Q8BWR4 Tagln-201ENSMUST00000034590 1595 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
Usp40Q8BWR4 Mtch2-205ENSMUST00000136872 2596 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
Usp40Q8BWR4 Sae1-203ENSMUST00000210999 1254 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
Usp40Q8BWR4 Gm18032-201ENSMUST00000222541 538 ntBASIC24.47■■□□□ 1.51
Usp40Q8BWR4 Mpp3-203ENSMUST00000107167 2066 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
Usp40Q8BWR4 Scamp4-201ENSMUST00000079883 1804 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
Usp40Q8BWR4 Sapcd2-202ENSMUST00000100323 1761 ntAPPRIS ALT2 TSL 2 BASIC24.47■■□□□ 1.51
Usp40Q8BWR4 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
Usp40Q8BWR4 Pdlim5-211ENSMUST00000198381 1555 ntAPPRIS ALT2 TSL 5 BASIC24.46■■□□□ 1.51
Usp40Q8BWR4 Foxj1-201ENSMUST00000036215 2623 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
Usp40Q8BWR4 Snx3-202ENSMUST00000105499 1057 ntTSL 5 BASIC24.46■■□□□ 1.51
Usp40Q8BWR4 Syt8-202ENSMUST00000105976 1289 ntAPPRIS ALT2 TSL 1 (best) BASIC24.46■■□□□ 1.51
Usp40Q8BWR4 Syt8-205ENSMUST00000122393 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC24.46■■□□□ 1.51
Usp40Q8BWR4 Gm13563-202ENSMUST00000150375 851 ntTSL 3 BASIC24.46■■□□□ 1.51
Usp40Q8BWR4 Gm16105-201ENSMUST00000156926 697 ntTSL 3 BASIC24.46■■□□□ 1.51
Usp40Q8BWR4 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
Usp40Q8BWR4 Eif1a-202ENSMUST00000168382 1750 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
Usp40Q8BWR4 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
Usp40Q8BWR4 Gpr180-201ENSMUST00000022728 1875 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.51
Usp40Q8BWR4 Gm37374-201ENSMUST00000194954 1829 ntBASIC24.45■■□□□ 1.5
Usp40Q8BWR4 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
Usp40Q8BWR4 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
Usp40Q8BWR4 Gm42477-201ENSMUST00000202427 469 ntTSL 3 BASIC24.45■■□□□ 1.5
Usp40Q8BWR4 Gm9745-201ENSMUST00000021573 684 ntAPPRIS P1 TSL 5 BASIC24.45■■□□□ 1.5
Usp40Q8BWR4 Pigu-201ENSMUST00000077626 1636 ntAPPRIS P2 TSL 1 (best) BASIC24.45■■□□□ 1.5
Usp40Q8BWR4 Srsf11-202ENSMUST00000072875 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC24.45■■□□□ 1.5
Usp40Q8BWR4 Sqor-201ENSMUST00000005953 1804 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
Usp40Q8BWR4 Aig1-201ENSMUST00000019942 1439 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
Usp40Q8BWR4 Kctd13-201ENSMUST00000032924 1676 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
Usp40Q8BWR4 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
Usp40Q8BWR4 Gm7638-201ENSMUST00000121348 967 ntBASIC24.44■■□□□ 1.5
Retrieved 100 of 76,532 protein–RNA pairs in 62.4 ms