Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 Dus1l-202ENSMUST00000106133 1762 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
Ubfd1Q78JW9 Rcbtb2-217ENSMUST00000167401 868 ntTSL 5 BASIC17.34■□□□□ 0.37
Ubfd1Q78JW9 Fxyd1-208ENSMUST00000205807 539 ntTSL 3 BASIC17.34■□□□□ 0.37
Ubfd1Q78JW9 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ubfd1Q78JW9 Rab1b-201ENSMUST00000025804 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ubfd1Q78JW9 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ubfd1Q78JW9 Tha1-201ENSMUST00000033230 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ubfd1Q78JW9 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ubfd1Q78JW9 Guca1a-201ENSMUST00000059348 871 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ubfd1Q78JW9 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ubfd1Q78JW9 Trmo-202ENSMUST00000086563 1554 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ubfd1Q78JW9 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ubfd1Q78JW9 Gapvd1-201ENSMUST00000028224 5695 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ubfd1Q78JW9 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Ubfd1Q78JW9 Prkaca-201ENSMUST00000005606 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Ubfd1Q78JW9 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Ubfd1Q78JW9 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Ubfd1Q78JW9 0610040J01Rik-201ENSMUST00000081747 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Ubfd1Q78JW9 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
Ubfd1Q78JW9 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Ubfd1Q78JW9 Jph1-201ENSMUST00000038382 4809 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Ubfd1Q78JW9 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Ubfd1Q78JW9 Golph3-205ENSMUST00000228671 2842 ntBASIC17.33■□□□□ 0.36
Ubfd1Q78JW9 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
Ubfd1Q78JW9 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Ubfd1Q78JW9 Bex3-202ENSMUST00000113112 826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Ubfd1Q78JW9 Gm13836-201ENSMUST00000121159 501 ntBASIC17.33■□□□□ 0.36
Ubfd1Q78JW9 Gm26643-201ENSMUST00000180854 1274 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Ubfd1Q78JW9 Gm10517-202ENSMUST00000192970 758 ntBASIC17.33■□□□□ 0.36
Ubfd1Q78JW9 Gm3375-201ENSMUST00000203929 796 ntBASIC17.33■□□□□ 0.36
Ubfd1Q78JW9 Tm2d1-201ENSMUST00000030292 952 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Ubfd1Q78JW9 Fam167b-201ENSMUST00000052835 913 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Ubfd1Q78JW9 Tollip-202ENSMUST00000055819 1100 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Ubfd1Q78JW9 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Ubfd1Q78JW9 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Ubfd1Q78JW9 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC17.33■□□□□ 0.36
Ubfd1Q78JW9 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC17.33■□□□□ 0.36
Ubfd1Q78JW9 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Ubfd1Q78JW9 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Ubfd1Q78JW9 Zfp706-201ENSMUST00000078976 4417 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Ubfd1Q78JW9 Ilk-212ENSMUST00000163389 1749 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Ubfd1Q78JW9 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Ubfd1Q78JW9 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
Ubfd1Q78JW9 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
Ubfd1Q78JW9 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Ubfd1Q78JW9 Coq5-201ENSMUST00000040421 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Ubfd1Q78JW9 Ttpal-202ENSMUST00000109408 1999 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Ubfd1Q78JW9 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Ubfd1Q78JW9 Gm5901-201ENSMUST00000106805 1140 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
Ubfd1Q78JW9 2210408F21Rik-211ENSMUST00000151800 750 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Ubfd1Q78JW9 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
Ubfd1Q78JW9 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
Ubfd1Q78JW9 Cmc1-202ENSMUST00000215799 531 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Ubfd1Q78JW9 Gm30025-201ENSMUST00000218555 728 ntBASIC17.32■□□□□ 0.36
Ubfd1Q78JW9 Tpsg1-201ENSMUST00000024999 1186 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Ubfd1Q78JW9 Izumo2-201ENSMUST00000085422 632 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Ubfd1Q78JW9 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Ubfd1Q78JW9 Tmem80-201ENSMUST00000026578 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Ubfd1Q78JW9 S1pr4-201ENSMUST00000053646 2386 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
Ubfd1Q78JW9 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Ubfd1Q78JW9 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
Ubfd1Q78JW9 Mpp3-203ENSMUST00000107167 2066 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Ubfd1Q78JW9 Vsig10-201ENSMUST00000086464 2052 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
Ubfd1Q78JW9 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Ubfd1Q78JW9 Arf1-202ENSMUST00000163300 1991 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ubfd1Q78JW9 Fam181a-201ENSMUST00000179363 1406 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
Ubfd1Q78JW9 Plxdc1-202ENSMUST00000107564 619 ntTSL 2 BASIC17.31■□□□□ 0.36
Ubfd1Q78JW9 Prss16-204ENSMUST00000150547 1159 ntTSL 3 BASIC17.31■□□□□ 0.36
Ubfd1Q78JW9 Cib1-207ENSMUST00000206084 772 ntTSL 3 BASIC17.31■□□□□ 0.36
Ubfd1Q78JW9 Cib1-202ENSMUST00000071457 702 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Ubfd1Q78JW9 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC17.31■□□□□ 0.36
Ubfd1Q78JW9 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC17.31■□□□□ 0.36
Ubfd1Q78JW9 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Ubfd1Q78JW9 Car2-201ENSMUST00000029078 1788 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ubfd1Q78JW9 Blcap-201ENSMUST00000088494 2108 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ubfd1Q78JW9 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
Ubfd1Q78JW9 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Ubfd1Q78JW9 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ubfd1Q78JW9 Rps5-202ENSMUST00000108539 794 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
Ubfd1Q78JW9 5430402O13Rik-201ENSMUST00000126537 869 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Ubfd1Q78JW9 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC17.3■□□□□ 0.36
Ubfd1Q78JW9 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Ubfd1Q78JW9 Otx2os1-204ENSMUST00000227221 751 ntBASIC17.3■□□□□ 0.36
Ubfd1Q78JW9 Ntpcr-201ENSMUST00000034313 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ubfd1Q78JW9 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC17.3■□□□□ 0.36
Ubfd1Q78JW9 Zc3h15-201ENSMUST00000081591 2111 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ubfd1Q78JW9 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Ubfd1Q78JW9 Prkci-201ENSMUST00000108249 4708 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Ubfd1Q78JW9 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Ubfd1Q78JW9 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Ubfd1Q78JW9 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Ubfd1Q78JW9 Ubtf-207ENSMUST00000128016 1062 ntTSL 2 BASIC17.29■□□□□ 0.36
Ubfd1Q78JW9 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Ubfd1Q78JW9 Gm20544-201ENSMUST00000174338 690 ntTSL 3 BASIC17.29■□□□□ 0.36
Ubfd1Q78JW9 Gm29791-202ENSMUST00000207888 369 ntBASIC17.29■□□□□ 0.36
Ubfd1Q78JW9 Gm4974-201ENSMUST00000209974 875 ntBASIC17.29■□□□□ 0.36
Ubfd1Q78JW9 AC153881.2-201ENSMUST00000214877 204 ntBASIC17.29■□□□□ 0.36
Ubfd1Q78JW9 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC17.29■□□□□ 0.36
Ubfd1Q78JW9 Olig2-201ENSMUST00000035608 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Ubfd1Q78JW9 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 25.2 ms