Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Sh3rf1Q69ZI1 Sntg2-201ENSMUST00000021004 2411 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Sh3rf1Q69ZI1 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC18.05■□□□□ 0.48
Sh3rf1Q69ZI1 Mpped2-202ENSMUST00000111063 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Sh3rf1Q69ZI1 Fam98a-201ENSMUST00000112507 2817 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Sh3rf1Q69ZI1 Abhd10-201ENSMUST00000066983 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Sh3rf1Q69ZI1 Rac1-202ENSMUST00000100489 2325 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Sh3rf1Q69ZI1 Scly-201ENSMUST00000027532 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Sh3rf1Q69ZI1 Immp2l-203ENSMUST00000134965 977 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
Sh3rf1Q69ZI1 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Sh3rf1Q69ZI1 Fbxo47-201ENSMUST00000093939 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Sh3rf1Q69ZI1 Dhh-201ENSMUST00000023737 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Sh3rf1Q69ZI1 P2rx5-201ENSMUST00000006104 2395 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Sh3rf1Q69ZI1 Esx1-201ENSMUST00000074698 1600 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Sh3rf1Q69ZI1 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC18.05■□□□□ 0.48
Sh3rf1Q69ZI1 Msx2-201ENSMUST00000021922 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Sh3rf1Q69ZI1 Tuba3a-201ENSMUST00000088246 1509 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Sh3rf1Q69ZI1 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Sh3rf1Q69ZI1 Gm44965-201ENSMUST00000204121 360 ntAPPRIS P1 TSL 3 BASIC18.04■□□□□ 0.48
Sh3rf1Q69ZI1 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
Sh3rf1Q69ZI1 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
Sh3rf1Q69ZI1 Phtf1-203ENSMUST00000090685 3006 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Sh3rf1Q69ZI1 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Sh3rf1Q69ZI1 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Sh3rf1Q69ZI1 Kmt5c-201ENSMUST00000098853 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Sh3rf1Q69ZI1 Tle4-202ENSMUST00000167776 4545 ntAPPRIS ALT1 TSL 5 BASIC18.04■□□□□ 0.48
Sh3rf1Q69ZI1 Rtn4-204ENSMUST00000102842 2257 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Sh3rf1Q69ZI1 Gm42417-201ENSMUST00000191849 2256 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Sh3rf1Q69ZI1 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
Sh3rf1Q69ZI1 Pcyt2-201ENSMUST00000026129 1881 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
Sh3rf1Q69ZI1 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC18.03■□□□□ 0.48
Sh3rf1Q69ZI1 Slc7a5-201ENSMUST00000045557 3517 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Sh3rf1Q69ZI1 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Sh3rf1Q69ZI1 Mgll-203ENSMUST00000113582 1034 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Sh3rf1Q69ZI1 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Sh3rf1Q69ZI1 1110004E09Rik-201ENSMUST00000023694 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Sh3rf1Q69ZI1 Coil-201ENSMUST00000036649 2607 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Sh3rf1Q69ZI1 Vsig10-201ENSMUST00000086464 2052 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
Sh3rf1Q69ZI1 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
Sh3rf1Q69ZI1 Bend6-202ENSMUST00000115161 2231 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Sh3rf1Q69ZI1 March8-202ENSMUST00000101032 4611 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Sh3rf1Q69ZI1 Ier2-201ENSMUST00000060427 1522 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
Sh3rf1Q69ZI1 A530084C06Rik-201ENSMUST00000170573 3200 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
Sh3rf1Q69ZI1 4930503L19Rik-201ENSMUST00000067556 2291 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Sh3rf1Q69ZI1 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Sh3rf1Q69ZI1 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Sh3rf1Q69ZI1 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Sh3rf1Q69ZI1 Nfil3-201ENSMUST00000071065 2026 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Sh3rf1Q69ZI1 Selenom-201ENSMUST00000094469 707 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Sh3rf1Q69ZI1 Tcf7l2-203ENSMUST00000111646 2839 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
Sh3rf1Q69ZI1 Elmo2-204ENSMUST00000103088 3052 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.47
Sh3rf1Q69ZI1 Lrch4-201ENSMUST00000031734 3078 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.47
Sh3rf1Q69ZI1 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
Sh3rf1Q69ZI1 Cnn2-201ENSMUST00000004784 2460 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Sh3rf1Q69ZI1 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
Sh3rf1Q69ZI1 Podxl2-202ENSMUST00000061262 2195 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
Sh3rf1Q69ZI1 Il17re-201ENSMUST00000053569 1898 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Sh3rf1Q69ZI1 Fbxo33-201ENSMUST00000043204 3688 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Sh3rf1Q69ZI1 Xpr1-202ENSMUST00000111774 2753 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Sh3rf1Q69ZI1 Arrb2-204ENSMUST00000102564 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Sh3rf1Q69ZI1 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Sh3rf1Q69ZI1 Eloc-203ENSMUST00000185771 742 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
Sh3rf1Q69ZI1 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC18.01■□□□□ 0.47
Sh3rf1Q69ZI1 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC18.01■□□□□ 0.47
Sh3rf1Q69ZI1 Prkci-201ENSMUST00000108249 4708 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Sh3rf1Q69ZI1 Smad5-203ENSMUST00000109876 4570 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Sh3rf1Q69ZI1 AC121961.1-201ENSMUST00000218594 1779 ntBASIC18.01■□□□□ 0.47
Sh3rf1Q69ZI1 Asnsd1-201ENSMUST00000027264 2442 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Sh3rf1Q69ZI1 Sptssa-201ENSMUST00000056228 1346 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Sh3rf1Q69ZI1 Sqor-201ENSMUST00000005953 1804 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Sh3rf1Q69ZI1 AC163637.2-201ENSMUST00000213826 1945 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
Sh3rf1Q69ZI1 Sh2b2-204ENSMUST00000196447 1783 ntTSL 1 (best) BASIC18■□□□□ 0.47
Sh3rf1Q69ZI1 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Sh3rf1Q69ZI1 Gm8520-201ENSMUST00000186517 868 ntBASIC18■□□□□ 0.47
Sh3rf1Q69ZI1 Gm20049-201ENSMUST00000219950 730 ntBASIC18■□□□□ 0.47
Sh3rf1Q69ZI1 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC18■□□□□ 0.47
Sh3rf1Q69ZI1 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC18■□□□□ 0.47
Sh3rf1Q69ZI1 Stxbp5-209ENSMUST00000141722 4702 ntAPPRIS P2 TSL 5 BASIC18■□□□□ 0.47
Sh3rf1Q69ZI1 Nrm-201ENSMUST00000074259 1466 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
Sh3rf1Q69ZI1 Sh3gl2-203ENSMUST00000107188 2286 ntTSL 1 (best) BASIC18■□□□□ 0.47
Sh3rf1Q69ZI1 Cfap36-201ENSMUST00000020754 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Sh3rf1Q69ZI1 9030624G23Rik-201ENSMUST00000101538 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Sh3rf1Q69ZI1 Gm9194-201ENSMUST00000220749 1447 ntBASIC17.99■□□□□ 0.47
Sh3rf1Q69ZI1 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Sh3rf1Q69ZI1 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
Sh3rf1Q69ZI1 Polr3gl-201ENSMUST00000091924 1427 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Sh3rf1Q69ZI1 Zc3h14-203ENSMUST00000110104 3146 ntTSL 5 BASIC17.99■□□□□ 0.47
Sh3rf1Q69ZI1 Trim24-201ENSMUST00000031859 4042 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
Sh3rf1Q69ZI1 Scube2-202ENSMUST00000106728 2890 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
Sh3rf1Q69ZI1 Zdhhc1-201ENSMUST00000044286 1737 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Sh3rf1Q69ZI1 Ern1-203ENSMUST00000106800 654 ntTSL 3 BASIC17.99■□□□□ 0.47
Sh3rf1Q69ZI1 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC17.99■□□□□ 0.47
Sh3rf1Q69ZI1 Cdh4-201ENSMUST00000000314 6388 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Sh3rf1Q69ZI1 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC17.99■□□□□ 0.47
Sh3rf1Q69ZI1 Arrb2-203ENSMUST00000102563 1352 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Sh3rf1Q69ZI1 Bcar1-201ENSMUST00000166232 3142 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
Sh3rf1Q69ZI1 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC17.99■□□□□ 0.47
Sh3rf1Q69ZI1 Bpifb4-203ENSMUST00000109759 2115 ntAPPRIS P2 TSL 5 BASIC17.99■□□□□ 0.47
Sh3rf1Q69ZI1 Trip10-205ENSMUST00000224885 2136 ntAPPRIS ALT2 BASIC17.99■□□□□ 0.47
Sh3rf1Q69ZI1 Wipf1-201ENSMUST00000094681 4728 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Retrieved 100 of 76,532 protein–RNA pairs in 24.1 ms