Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Ephx4-201ENSMUST00000049146 1279 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
Usf1Q61069 Alkbh2-201ENSMUST00000053657 1073 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Usf1Q61069 Gm8587-201ENSMUST00000076538 843 ntBASIC16.23■□□□□ 0.19
Usf1Q61069 Olfr315-201ENSMUST00000081533 998 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
Usf1Q61069 Larp1b-206ENSMUST00000191872 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Usf1Q61069 Fzd8-201ENSMUST00000041080 3346 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
Usf1Q61069 Ggt6-202ENSMUST00000100903 1387 ntTSL 5 BASIC16.23■□□□□ 0.19
Usf1Q61069 Nptn-212ENSMUST00000177292 1390 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
Usf1Q61069 Ddit4-201ENSMUST00000020308 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Usf1Q61069 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Usf1Q61069 Mettl4-ps1-202ENSMUST00000130218 1323 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Usf1Q61069 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
Usf1Q61069 Lrch2-201ENSMUST00000112819 4892 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
Usf1Q61069 Ttpal-202ENSMUST00000109408 1999 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Usf1Q61069 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Usf1Q61069 Tekt1-201ENSMUST00000021155 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Usf1Q61069 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Usf1Q61069 Nmnat3-203ENSMUST00000112938 848 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Usf1Q61069 Pld6-202ENSMUST00000125307 948 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Usf1Q61069 1110065P20Rik-204ENSMUST00000163946 762 ntTSL 2 BASIC16.22■□□□□ 0.19
Usf1Q61069 Gzmm-201ENSMUST00000020549 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Usf1Q61069 AC156832.2-201ENSMUST00000216217 1295 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Usf1Q61069 Bex3-201ENSMUST00000053540 930 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
Usf1Q61069 Krtap1-5-201ENSMUST00000054532 1041 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
Usf1Q61069 Eif6-201ENSMUST00000029142 1500 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Usf1Q61069 Runx2-207ENSMUST00000160673 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Usf1Q61069 Pkmyt1-201ENSMUST00000024701 2039 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Usf1Q61069 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
Usf1Q61069 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC16.22■□□□□ 0.19
Usf1Q61069 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Usf1Q61069 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
Usf1Q61069 Kcnc3-207ENSMUST00000209177 2960 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
Usf1Q61069 Arrb1-210ENSMUST00000179755 7135 ntTSL 5 BASIC16.22■□□□□ 0.19
Usf1Q61069 Arrb1-202ENSMUST00000098266 7132 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Usf1Q61069 Erc1-202ENSMUST00000079582 2304 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Usf1Q61069 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
Usf1Q61069 Adcy3-202ENSMUST00000124505 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Usf1Q61069 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
Usf1Q61069 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Usf1Q61069 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Usf1Q61069 Spint1-203ENSMUST00000110817 2323 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Usf1Q61069 Nr1h2-201ENSMUST00000073488 1999 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
Usf1Q61069 Ankle1-202ENSMUST00000120725 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Usf1Q61069 Rraga-201ENSMUST00000091064 1618 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
Usf1Q61069 Blvrb-204ENSMUST00000133750 509 ntTSL 2 BASIC16.21■□□□□ 0.19
Usf1Q61069 Gm16105-201ENSMUST00000156926 697 ntTSL 3 BASIC16.21■□□□□ 0.19
Usf1Q61069 Aicda-202ENSMUST00000160685 1292 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Usf1Q61069 Cdc34-202ENSMUST00000166603 1078 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Usf1Q61069 Pdcd2l-201ENSMUST00000002710 1295 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Usf1Q61069 Krtcap3-201ENSMUST00000054829 904 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Usf1Q61069 Gm7461-201ENSMUST00000058918 827 ntBASIC16.21■□□□□ 0.19
Usf1Q61069 Tctex1d4-201ENSMUST00000062206 990 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Usf1Q61069 Cmtm7-202ENSMUST00000084867 874 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Usf1Q61069 Fam92a-201ENSMUST00000087052 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Usf1Q61069 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Usf1Q61069 Ptges3l-202ENSMUST00000103102 1463 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Usf1Q61069 4930560O18Rik-201ENSMUST00000207051 1595 ntBASIC16.21■□□□□ 0.18
Usf1Q61069 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Usf1Q61069 Uhmk1-202ENSMUST00000123399 7775 ntTSL 5 BASIC16.21■□□□□ 0.18
Usf1Q61069 Sstr1-202ENSMUST00000110671 1752 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.18
Usf1Q61069 Tedc1-201ENSMUST00000049271 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Usf1Q61069 Eif2b4-202ENSMUST00000114603 1966 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Usf1Q61069 Fstl3-201ENSMUST00000020575 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Usf1Q61069 Fam181a-203ENSMUST00000191218 1419 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
Usf1Q61069 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Usf1Q61069 Psmd8-203ENSMUST00000186182 1512 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Usf1Q61069 Oxct2b-201ENSMUST00000102648 1735 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
Usf1Q61069 Gm7638-201ENSMUST00000121348 967 ntBASIC16.2■□□□□ 0.18
Usf1Q61069 C030037D09Rik-202ENSMUST00000136201 1216 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Usf1Q61069 Atp6v0b-208ENSMUST00000150204 935 ntTSL 5 BASIC16.2■□□□□ 0.18
Usf1Q61069 Gm17807-201ENSMUST00000186869 298 ntBASIC16.2■□□□□ 0.18
Usf1Q61069 Kiss1r-202ENSMUST00000219745 979 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Usf1Q61069 Lsm10-201ENSMUST00000055575 943 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Usf1Q61069 Dmap1-201ENSMUST00000102687 1566 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Usf1Q61069 Actl6b-205ENSMUST00000139395 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Usf1Q61069 Eva1c-202ENSMUST00000099543 1554 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Usf1Q61069 Gata5os-201ENSMUST00000069943 1678 ntTSL 2 BASIC16.2■□□□□ 0.18
Usf1Q61069 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Usf1Q61069 Klc3-202ENSMUST00000108457 1632 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Usf1Q61069 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
Usf1Q61069 Gm38345-201ENSMUST00000192635 1748 ntBASIC16.19■□□□□ 0.18
Usf1Q61069 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Usf1Q61069 Soat2-201ENSMUST00000023806 2213 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Usf1Q61069 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Usf1Q61069 Ptov1-201ENSMUST00000046575 1883 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Usf1Q61069 Sae1-204ENSMUST00000211741 1663 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Usf1Q61069 Trmo-202ENSMUST00000086563 1554 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
Usf1Q61069 Sap18-203ENSMUST00000111269 459 ntTSL 2 BASIC16.19■□□□□ 0.18
Usf1Q61069 Gm9013-201ENSMUST00000132939 882 ntBASIC16.19■□□□□ 0.18
Usf1Q61069 Gm26827-201ENSMUST00000181911 148 ntTSL 5 BASIC16.19■□□□□ 0.18
Usf1Q61069 Gm28033-201ENSMUST00000184224 96 ntBASIC16.19■□□□□ 0.18
Usf1Q61069 Timm8a2-201ENSMUST00000045976 913 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Usf1Q61069 Znhit1-202ENSMUST00000085941 740 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Usf1Q61069 Gapvd1-201ENSMUST00000028224 5695 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Usf1Q61069 Lats2-201ENSMUST00000022531 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Usf1Q61069 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
Usf1Q61069 Cdh4-201ENSMUST00000000314 6388 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Usf1Q61069 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC16.19■□□□□ 0.18
Usf1Q61069 Pcbp1-201ENSMUST00000053015 1830 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
Usf1Q61069 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 82.3 ms