Protein–RNA interactions for Protein: Q5I043

Usp28, Ubiquitin carboxyl-terminal hydrolase 28, mousemouse

Predictions only

Length 1,051 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp28Q5I043 Zc3h14-203ENSMUST00000110104 3146 ntTSL 5 BASIC20.24■□□□□ 0.83
Usp28Q5I043 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Usp28Q5I043 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC20.24■□□□□ 0.83
Usp28Q5I043 Tmbim6-202ENSMUST00000159209 944 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
Usp28Q5I043 Slc7a6os-201ENSMUST00000035925 1246 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Usp28Q5I043 Prrg2-201ENSMUST00000007981 1295 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Usp28Q5I043 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
Usp28Q5I043 Il1rn-201ENSMUST00000114482 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Usp28Q5I043 C1qtnf12-201ENSMUST00000024338 1315 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Usp28Q5I043 Tmem8-201ENSMUST00000025010 3464 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Usp28Q5I043 Racgap1-213ENSMUST00000171702 3052 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Usp28Q5I043 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC20.23■□□□□ 0.83
Usp28Q5I043 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC20.23■□□□□ 0.83
Usp28Q5I043 Gm13148-201ENSMUST00000118892 745 ntBASIC20.23■□□□□ 0.83
Usp28Q5I043 Gm42569-201ENSMUST00000200539 472 ntBASIC20.23■□□□□ 0.83
Usp28Q5I043 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Usp28Q5I043 Wisp2-201ENSMUST00000029188 1719 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Usp28Q5I043 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
Usp28Q5I043 Krt73-201ENSMUST00000063292 2165 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Usp28Q5I043 Ptges3-202ENSMUST00000084771 1559 ntTSL 5 BASIC20.23■□□□□ 0.83
Usp28Q5I043 Atf7-209ENSMUST00000184485 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Usp28Q5I043 9030624G23Rik-201ENSMUST00000101538 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Usp28Q5I043 Axin1-203ENSMUST00000163421 2890 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
Usp28Q5I043 Podxl2-201ENSMUST00000038409 1994 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
Usp28Q5I043 Prpsap1-201ENSMUST00000106391 1841 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Usp28Q5I043 Serinc2-201ENSMUST00000105996 1878 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
Usp28Q5I043 Gm27029-202ENSMUST00000107259 1855 ntAPPRIS P5 TSL 5 BASIC20.22■□□□□ 0.83
Usp28Q5I043 Tmem81-201ENSMUST00000058167 1742 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Usp28Q5I043 Eepd1-201ENSMUST00000040677 2723 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Usp28Q5I043 Elac2-203ENSMUST00000108697 2612 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
Usp28Q5I043 Gm38285-201ENSMUST00000192928 922 ntBASIC20.22■□□□□ 0.83
Usp28Q5I043 Hebp1-201ENSMUST00000045855 1058 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Usp28Q5I043 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Usp28Q5I043 Gnb5-201ENSMUST00000076889 1188 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Usp28Q5I043 Arpc1a-201ENSMUST00000031625 1632 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Usp28Q5I043 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
Usp28Q5I043 Hpca-202ENSMUST00000095807 1666 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Usp28Q5I043 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Usp28Q5I043 Ppme1-201ENSMUST00000032963 2772 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Usp28Q5I043 Naa60-212ENSMUST00000186375 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Usp28Q5I043 Mag-201ENSMUST00000040548 2419 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Usp28Q5I043 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
Usp28Q5I043 Hapln2-201ENSMUST00000005014 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Usp28Q5I043 Ola1-201ENSMUST00000028517 2175 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Usp28Q5I043 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Usp28Q5I043 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC20.21■□□□□ 0.83
Usp28Q5I043 Tmem203-201ENSMUST00000104998 854 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
Usp28Q5I043 Dnajc19-204ENSMUST00000120805 551 ntTSL 2 BASIC20.21■□□□□ 0.83
Usp28Q5I043 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Usp28Q5I043 Gm4881-201ENSMUST00000206705 1152 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
Usp28Q5I043 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Usp28Q5I043 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Usp28Q5I043 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC20.21■□□□□ 0.83
Usp28Q5I043 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Usp28Q5I043 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
Usp28Q5I043 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Usp28Q5I043 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC20.21■□□□□ 0.83
Usp28Q5I043 Vps53-202ENSMUST00000094015 2645 ntTSL 5 BASIC20.21■□□□□ 0.83
Usp28Q5I043 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC20.21■□□□□ 0.83
Usp28Q5I043 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Usp28Q5I043 Ino80e-202ENSMUST00000106342 1840 ntTSL 3 BASIC20.2■□□□□ 0.82
Usp28Q5I043 Cdc123-201ENSMUST00000043864 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Usp28Q5I043 Fam20c-201ENSMUST00000026972 3582 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Usp28Q5I043 Pmpcb-201ENSMUST00000030882 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Usp28Q5I043 Dusp9-201ENSMUST00000019701 2722 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Usp28Q5I043 Gm43808-201ENSMUST00000202534 2065 ntBASIC20.2■□□□□ 0.82
Usp28Q5I043 Cep68-204ENSMUST00000162811 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Usp28Q5I043 Gm26885-201ENSMUST00000181920 1688 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Usp28Q5I043 Appl2-201ENSMUST00000020500 3020 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Usp28Q5I043 Pi4k2b-201ENSMUST00000031081 3139 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
Usp28Q5I043 Gm2399-201ENSMUST00000104944 225 ntBASIC20.2■□□□□ 0.82
Usp28Q5I043 Gm7290-201ENSMUST00000104990 617 ntBASIC20.2■□□□□ 0.82
Usp28Q5I043 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
Usp28Q5I043 Gm12918-201ENSMUST00000120234 636 ntBASIC20.2■□□□□ 0.82
Usp28Q5I043 Gm15710-201ENSMUST00000121821 636 ntBASIC20.2■□□□□ 0.82
Usp28Q5I043 Gm5075-201ENSMUST00000196916 622 ntBASIC20.2■□□□□ 0.82
Usp28Q5I043 AC133650.2-201ENSMUST00000217036 607 ntTSL 3 BASIC20.2■□□□□ 0.82
Usp28Q5I043 Nfu1-201ENSMUST00000032060 948 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
Usp28Q5I043 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC20.2■□□□□ 0.82
Usp28Q5I043 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC20.2■□□□□ 0.82
Usp28Q5I043 Srf-201ENSMUST00000015749 4093 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Usp28Q5I043 Rrp9-201ENSMUST00000047721 1586 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Usp28Q5I043 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
Usp28Q5I043 Tle4-202ENSMUST00000167776 4545 ntAPPRIS ALT1 TSL 5 BASIC20.2■□□□□ 0.82
Usp28Q5I043 6430573F11Rik-202ENSMUST00000135373 2573 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Usp28Q5I043 Eps8-203ENSMUST00000111878 3560 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Usp28Q5I043 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
Usp28Q5I043 Eif2b5-201ENSMUST00000003320 3186 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Usp28Q5I043 Bmt2-201ENSMUST00000045235 4143 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Usp28Q5I043 Tm7sf2-201ENSMUST00000025713 1471 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Usp28Q5I043 Scube2-202ENSMUST00000106728 2890 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
Usp28Q5I043 Tor2a-201ENSMUST00000009707 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Usp28Q5I043 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Usp28Q5I043 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
Usp28Q5I043 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Usp28Q5I043 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Usp28Q5I043 Gm26524-201ENSMUST00000192339 390 ntBASIC20.19■□□□□ 0.82
Usp28Q5I043 4930413G21Rik-201ENSMUST00000205998 993 ntBASIC20.19■□□□□ 0.82
Usp28Q5I043 Ttc32-201ENSMUST00000085741 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Usp28Q5I043 Mfsd10-202ENSMUST00000114329 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 32.5 ms