Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Gm27742-201ENSMUST00000184667 60 ntBASIC22.72■■□□□ 1.23
Ddb1Q3U1J4 Gm43514-201ENSMUST00000198852 424 ntBASIC22.72■■□□□ 1.23
Ddb1Q3U1J4 Gm9731-201ENSMUST00000209480 747 ntBASIC22.72■■□□□ 1.23
Ddb1Q3U1J4 Il3ra-202ENSMUST00000223589 738 ntBASIC22.72■■□□□ 1.23
Ddb1Q3U1J4 Gm5867-201ENSMUST00000063197 592 ntBASIC22.72■■□□□ 1.23
Ddb1Q3U1J4 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
Ddb1Q3U1J4 Rasa1-201ENSMUST00000109552 4563 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
Ddb1Q3U1J4 Paip1-201ENSMUST00000026520 2551 ntAPPRIS P3 TSL 1 (best) BASIC22.72■■□□□ 1.23
Ddb1Q3U1J4 Pqlc1-207ENSMUST00000140594 2356 ntAPPRIS P3 TSL 1 (best) BASIC22.71■■□□□ 1.23
Ddb1Q3U1J4 Runx2-207ENSMUST00000160673 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC22.71■■□□□ 1.23
Ddb1Q3U1J4 Gm26689-201ENSMUST00000180927 1818 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
Ddb1Q3U1J4 Gm26553-201ENSMUST00000181531 1818 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
Ddb1Q3U1J4 Gpr180-201ENSMUST00000022728 1875 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
Ddb1Q3U1J4 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
Ddb1Q3U1J4 Ncmap-205ENSMUST00000105860 2000 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
Ddb1Q3U1J4 Pemt-203ENSMUST00000102693 961 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
Ddb1Q3U1J4 Rapgef3os1-201ENSMUST00000149373 483 ntTSL 3 BASIC22.71■■□□□ 1.23
Ddb1Q3U1J4 Gm15545-203ENSMUST00000150613 1059 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
Ddb1Q3U1J4 Jagn1-202ENSMUST00000204254 1147 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
Ddb1Q3U1J4 Rncr4-201ENSMUST00000194541 2234 ntBASIC22.71■■□□□ 1.23
Ddb1Q3U1J4 Prkg2-201ENSMUST00000031277 2618 ntTSL 5 BASIC22.71■■□□□ 1.23
Ddb1Q3U1J4 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC22.71■■□□□ 1.23
Ddb1Q3U1J4 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC22.71■■□□□ 1.23
Ddb1Q3U1J4 Kcnk4-201ENSMUST00000025908 1715 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
Ddb1Q3U1J4 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC22.7■■□□□ 1.23
Ddb1Q3U1J4 Nnat-202ENSMUST00000109526 1213 ntAPPRIS P4 TSL 1 (best) BASIC22.7■■□□□ 1.22
Ddb1Q3U1J4 Gm15890-201ENSMUST00000161024 770 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
Ddb1Q3U1J4 Bcl7b-203ENSMUST00000111188 1434 ntAPPRIS ALT1 TSL 5 BASIC22.7■■□□□ 1.22
Ddb1Q3U1J4 Ccdc34-201ENSMUST00000028580 2070 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
Ddb1Q3U1J4 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
Ddb1Q3U1J4 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC22.69■■□□□ 1.22
Ddb1Q3U1J4 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
Ddb1Q3U1J4 Gm10418-201ENSMUST00000100943 576 ntBASIC22.69■■□□□ 1.22
Ddb1Q3U1J4 Gm12963-201ENSMUST00000131846 783 ntTSL 5 BASIC22.69■■□□□ 1.22
Ddb1Q3U1J4 Gm26039-201ENSMUST00000158152 144 ntBASIC22.69■■□□□ 1.22
Ddb1Q3U1J4 Tmem178b-203ENSMUST00000180886 712 ntTSL 5 BASIC22.69■■□□□ 1.22
Ddb1Q3U1J4 Gm26661-201ENSMUST00000181025 471 ntAPPRIS P1 BASIC22.69■■□□□ 1.22
Ddb1Q3U1J4 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC22.69■■□□□ 1.22
Ddb1Q3U1J4 Gm4737-201ENSMUST00000059524 2093 ntAPPRIS P1 BASIC22.69■■□□□ 1.22
Ddb1Q3U1J4 Tmem80-201ENSMUST00000026578 1800 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Ddb1Q3U1J4 Setdb2-202ENSMUST00000111253 1774 ntTSL 2 BASIC22.68■■□□□ 1.22
Ddb1Q3U1J4 Tra2a-204ENSMUST00000204189 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC22.68■■□□□ 1.22
Ddb1Q3U1J4 Anxa2-201ENSMUST00000034756 1447 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Ddb1Q3U1J4 Hspb6-201ENSMUST00000044048 1363 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Ddb1Q3U1J4 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Ddb1Q3U1J4 Stac2-201ENSMUST00000017544 3050 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Ddb1Q3U1J4 Smim1-210ENSMUST00000146054 707 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Ddb1Q3U1J4 Gm25925-201ENSMUST00000158314 306 ntBASIC22.68■■□□□ 1.22
Ddb1Q3U1J4 Rpl14-201ENSMUST00000165532 1009 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Ddb1Q3U1J4 Gm6443-201ENSMUST00000203599 874 ntBASIC22.68■■□□□ 1.22
Ddb1Q3U1J4 Gm44930-202ENSMUST00000208733 689 ntTSL 5 BASIC22.68■■□□□ 1.22
Ddb1Q3U1J4 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC22.68■■□□□ 1.22
Ddb1Q3U1J4 Pkmyt1-201ENSMUST00000024701 2039 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Ddb1Q3U1J4 4430402I18Rik-205ENSMUST00000162110 1559 ntAPPRIS P1 TSL 5 BASIC22.67■■□□□ 1.22
Ddb1Q3U1J4 Wnt10b-202ENSMUST00000166022 1594 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
Ddb1Q3U1J4 Pacsin3-203ENSMUST00000111349 1993 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
Ddb1Q3U1J4 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC22.67■■□□□ 1.22
Ddb1Q3U1J4 Fgf23-201ENSMUST00000000186 1814 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
Ddb1Q3U1J4 Scml4-203ENSMUST00000105495 1033 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
Ddb1Q3U1J4 Gm20422-202ENSMUST00000149782 956 ntTSL 2 BASIC22.67■■□□□ 1.22
Ddb1Q3U1J4 Gm6623-201ENSMUST00000173570 544 ntBASIC22.67■■□□□ 1.22
Ddb1Q3U1J4 AC120002.2-201ENSMUST00000220205 773 ntBASIC22.67■■□□□ 1.22
Ddb1Q3U1J4 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
Ddb1Q3U1J4 Gm7008-201ENSMUST00000038121 1366 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
Ddb1Q3U1J4 Tfap4-201ENSMUST00000005862 2113 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
Ddb1Q3U1J4 Gm8797-201ENSMUST00000192045 490 ntAPPRIS P1 BASIC22.66■■□□□ 1.22
Ddb1Q3U1J4 Imp3-201ENSMUST00000034827 924 ntAPPRIS P1 BASIC22.66■■□□□ 1.22
Ddb1Q3U1J4 Ifi27l2b-201ENSMUST00000044687 1093 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
Ddb1Q3U1J4 4933427E11Rik-201ENSMUST00000056711 1214 ntBASIC22.66■■□□□ 1.22
Ddb1Q3U1J4 Eme2-202ENSMUST00000121542 1521 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
Ddb1Q3U1J4 AC121961.1-201ENSMUST00000218594 1779 ntBASIC22.66■■□□□ 1.22
Ddb1Q3U1J4 Fcgrt-201ENSMUST00000003512 1770 ntAPPRIS P2 TSL 1 (best) BASIC22.66■■□□□ 1.22
Ddb1Q3U1J4 Trim54-202ENSMUST00000202769 1408 ntAPPRIS ALT1 TSL 5 BASIC22.65■■□□□ 1.22
Ddb1Q3U1J4 Vstm2b-201ENSMUST00000044705 2627 ntAPPRIS P1 TSL 5 BASIC22.65■■□□□ 1.22
Ddb1Q3U1J4 Gm19569-202ENSMUST00000184658 1305 ntTSL 2 BASIC22.65■■□□□ 1.22
Ddb1Q3U1J4 Slc19a2-204ENSMUST00000169394 894 ntTSL 5 BASIC22.65■■□□□ 1.22
Ddb1Q3U1J4 Flg-202ENSMUST00000178008 768 ntAPPRIS ALT2 BASIC22.65■■□□□ 1.22
Ddb1Q3U1J4 Flg-205ENSMUST00000179250 765 ntAPPRIS ALT2 BASIC22.65■■□□□ 1.22
Ddb1Q3U1J4 Flg-206ENSMUST00000179477 768 ntAPPRIS ALT2 BASIC22.65■■□□□ 1.22
Ddb1Q3U1J4 Gm3272-201ENSMUST00000181181 1229 ntBASIC22.65■■□□□ 1.22
Ddb1Q3U1J4 Gm37025-201ENSMUST00000195159 829 ntBASIC22.65■■□□□ 1.22
Ddb1Q3U1J4 Fam213b-201ENSMUST00000030935 883 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Ddb1Q3U1J4 Sox6os-201ENSMUST00000032900 420 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
Ddb1Q3U1J4 Gm10566-201ENSMUST00000086739 996 ntBASIC22.65■■□□□ 1.22
Ddb1Q3U1J4 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC22.65■■□□□ 1.22
Ddb1Q3U1J4 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Ddb1Q3U1J4 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
Ddb1Q3U1J4 Mrps16-201ENSMUST00000061444 2572 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
Ddb1Q3U1J4 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
Ddb1Q3U1J4 Pank2-204ENSMUST00000150843 4266 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
Ddb1Q3U1J4 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC22.64■■□□□ 1.22
Ddb1Q3U1J4 Magix-201ENSMUST00000115695 1342 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
Ddb1Q3U1J4 Gm11860-201ENSMUST00000122346 1010 ntBASIC22.64■■□□□ 1.21
Ddb1Q3U1J4 Gm34391-201ENSMUST00000203706 907 ntBASIC22.64■■□□□ 1.21
Ddb1Q3U1J4 Gm32031-203ENSMUST00000208993 649 ntTSL 2 BASIC22.64■■□□□ 1.21
Ddb1Q3U1J4 Gm17949-201ENSMUST00000210548 1179 ntAPPRIS P1 TSL 5 BASIC22.64■■□□□ 1.21
Ddb1Q3U1J4 AC164629.2-201ENSMUST00000217916 270 ntBASIC22.64■■□□□ 1.21
Ddb1Q3U1J4 Mrps18a-201ENSMUST00000024763 884 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
Ddb1Q3U1J4 Tyk2-205ENSMUST00000214864 1662 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
Ddb1Q3U1J4 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
Retrieved 100 of 76,532 protein–RNA pairs in 18.7 ms