Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Cyp4f14-202ENSMUST00000179434 2207 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
Cdh11P55288 Cyp4f14-201ENSMUST00000054174 2207 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Cdh11P55288 Tymp-201ENSMUST00000023285 2037 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Cdh11P55288 Fam171a1-204ENSMUST00000115099 4149 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
Cdh11P55288 Gm15408-201ENSMUST00000124198 1379 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Cdh11P55288 Gm10655-201ENSMUST00000098658 1397 ntBASIC16.24■□□□□ 0.19
Cdh11P55288 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Cdh11P55288 Rcc1-201ENSMUST00000030726 2278 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Cdh11P55288 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC16.24■□□□□ 0.19
Cdh11P55288 Fignl2-201ENSMUST00000178140 4206 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
Cdh11P55288 Fam109a-201ENSMUST00000056654 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Cdh11P55288 Bin2-204ENSMUST00000182775 1908 ntTSL 5 BASIC16.23■□□□□ 0.19
Cdh11P55288 Dus1l-202ENSMUST00000106133 1762 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
Cdh11P55288 Gfer-201ENSMUST00000046839 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Cdh11P55288 Ttc14-203ENSMUST00000117915 4913 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Cdh11P55288 Gm7290-201ENSMUST00000104990 617 ntBASIC16.23■□□□□ 0.19
Cdh11P55288 Gm12918-201ENSMUST00000120234 636 ntBASIC16.23■□□□□ 0.19
Cdh11P55288 Gm15710-201ENSMUST00000121821 636 ntBASIC16.23■□□□□ 0.19
Cdh11P55288 A830035A12Rik-201ENSMUST00000147445 861 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Cdh11P55288 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC16.23■□□□□ 0.19
Cdh11P55288 Gm5075-201ENSMUST00000196916 622 ntBASIC16.23■□□□□ 0.19
Cdh11P55288 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Cdh11P55288 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC16.23■□□□□ 0.19
Cdh11P55288 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC16.23■□□□□ 0.19
Cdh11P55288 Pop5-201ENSMUST00000081497 1025 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
Cdh11P55288 Cspg5-202ENSMUST00000196060 3790 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Cdh11P55288 Ankrd17-203ENSMUST00000168058 9311 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
Cdh11P55288 Glrx2-210ENSMUST00000185362 3337 ntAPPRIS P4 TSL 1 (best) BASIC16.23■□□□□ 0.19
Cdh11P55288 Map3k7-202ENSMUST00000080933 5669 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
Cdh11P55288 Lrrfip2-202ENSMUST00000098340 3191 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Cdh11P55288 Gpn2-201ENSMUST00000030661 1367 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Cdh11P55288 Shq1-202ENSMUST00000113312 6816 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Cdh11P55288 Mterf1a-202ENSMUST00000117463 2413 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Cdh11P55288 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Cdh11P55288 Yeats4-201ENSMUST00000020382 1327 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Cdh11P55288 Senp2-201ENSMUST00000023561 4499 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Cdh11P55288 Gm6598-201ENSMUST00000202719 2615 ntBASIC16.22■□□□□ 0.19
Cdh11P55288 Gm45447-201ENSMUST00000209874 1805 ntTSL 5 BASIC16.22■□□□□ 0.19
Cdh11P55288 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Cdh11P55288 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC16.22■□□□□ 0.19
Cdh11P55288 B930094E09Rik-201ENSMUST00000164667 1240 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
Cdh11P55288 Spr-202ENSMUST00000174286 775 ntTSL 2 BASIC16.22■□□□□ 0.19
Cdh11P55288 Gm3807-201ENSMUST00000193520 1168 ntBASIC16.22■□□□□ 0.19
Cdh11P55288 Gm6365-201ENSMUST00000054711 744 ntBASIC16.22■□□□□ 0.19
Cdh11P55288 Gnao1-201ENSMUST00000034198 2948 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Cdh11P55288 Ppp1r9b-201ENSMUST00000038696 4508 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Cdh11P55288 Tigd3-201ENSMUST00000055911 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Cdh11P55288 Nfatc3-201ENSMUST00000109308 5984 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Cdh11P55288 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Cdh11P55288 Ap2a2-201ENSMUST00000003038 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Cdh11P55288 Krt73-201ENSMUST00000063292 2165 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Cdh11P55288 Zfp277-201ENSMUST00000069637 2188 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
Cdh11P55288 Tssk6-201ENSMUST00000050373 1335 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
Cdh11P55288 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Cdh11P55288 Paqr7-201ENSMUST00000081525 2351 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Cdh11P55288 Ube2cbp-201ENSMUST00000034986 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Cdh11P55288 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Cdh11P55288 Zfp622-201ENSMUST00000061875 2802 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Cdh11P55288 Matn4-202ENSMUST00000103104 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Cdh11P55288 Fam172a-202ENSMUST00000099358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Cdh11P55288 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
Cdh11P55288 Gm5408-201ENSMUST00000197998 747 ntBASIC16.21■□□□□ 0.19
Cdh11P55288 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
Cdh11P55288 Tcf7-202ENSMUST00000109071 1742 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Cdh11P55288 Cbx1-201ENSMUST00000018810 1824 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Cdh11P55288 Depdc7-201ENSMUST00000028595 1801 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Cdh11P55288 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Cdh11P55288 Msl1-204ENSMUST00000107487 2836 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
Cdh11P55288 Ostm1-201ENSMUST00000040718 3006 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Cdh11P55288 Rbl2-201ENSMUST00000034091 4925 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.18
Cdh11P55288 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Cdh11P55288 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
Cdh11P55288 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Cdh11P55288 Serbp1-211ENSMUST00000204293 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Cdh11P55288 Uhrf2-201ENSMUST00000025739 3536 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Cdh11P55288 Klhdc8a-201ENSMUST00000046071 4269 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Cdh11P55288 Csnk1g3-201ENSMUST00000069597 4394 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
Cdh11P55288 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Cdh11P55288 Tmem94-202ENSMUST00000103033 5238 ntAPPRIS P2 TSL 2 BASIC16.2■□□□□ 0.18
Cdh11P55288 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Cdh11P55288 Gpatch2-201ENSMUST00000044812 1639 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Cdh11P55288 Cyp26c1-201ENSMUST00000073391 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Cdh11P55288 Gm16897-201ENSMUST00000180780 2492 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Cdh11P55288 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC16.2■□□□□ 0.18
Cdh11P55288 Coq5-201ENSMUST00000040421 2037 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Cdh11P55288 Etv2-201ENSMUST00000108147 1048 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Cdh11P55288 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC16.2■□□□□ 0.18
Cdh11P55288 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Cdh11P55288 Esrrb-201ENSMUST00000021680 2136 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
Cdh11P55288 Pex16-201ENSMUST00000028650 1392 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Cdh11P55288 Cacna1c-216ENSMUST00000188522 7338 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
Cdh11P55288 Zfp119b-201ENSMUST00000056147 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Cdh11P55288 Sncaip-205ENSMUST00000178011 3433 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
Cdh11P55288 Thumpd3-201ENSMUST00000032398 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Cdh11P55288 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Cdh11P55288 Ndufv1-202ENSMUST00000128787 1436 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
Cdh11P55288 Ndufv1-207ENSMUST00000134479 1438 ntTSL 5 BASIC16.19■□□□□ 0.18
Cdh11P55288 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Cdh11P55288 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Cdh11P55288 Pmepa1-201ENSMUST00000036248 4538 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 52.1 ms