Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC16.89■□□□□ 0.3
Msx1P13297 Gm45447-201ENSMUST00000209874 1805 ntTSL 5 BASIC16.89■□□□□ 0.29
Msx1P13297 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Msx1P13297 Dolk-201ENSMUST00000100219 2104 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
Msx1P13297 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC16.89■□□□□ 0.29
Msx1P13297 Gm43799-201ENSMUST00000201845 579 ntBASIC16.89■□□□□ 0.29
Msx1P13297 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
Msx1P13297 Nfu1-201ENSMUST00000032060 948 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
Msx1P13297 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
Msx1P13297 Trim44-201ENSMUST00000102573 5612 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Msx1P13297 Galnt16-204ENSMUST00000218943 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Msx1P13297 Casp6-201ENSMUST00000029626 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Msx1P13297 Ccser1-203ENSMUST00000126214 5657 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
Msx1P13297 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Msx1P13297 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Msx1P13297 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC16.88■□□□□ 0.29
Msx1P13297 Ankrd39-202ENSMUST00000194894 664 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Msx1P13297 Gm42884-202ENSMUST00000202523 423 ntTSL 3 BASIC16.88■□□□□ 0.29
Msx1P13297 Slc16a10-202ENSMUST00000213488 2325 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Msx1P13297 Dynll2-202ENSMUST00000107923 2443 ntAPPRIS P1 TSL 3 BASIC16.88■□□□□ 0.29
Msx1P13297 Maff-201ENSMUST00000096350 1933 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Msx1P13297 B3gat2-202ENSMUST00000140583 1737 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Msx1P13297 Slc39a10-201ENSMUST00000027131 5498 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Msx1P13297 Rrs1-201ENSMUST00000072079 2048 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
Msx1P13297 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Msx1P13297 Spc25-202ENSMUST00000112320 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Msx1P13297 Cpeb2-204ENSMUST00000166713 6846 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
Msx1P13297 Rps5-202ENSMUST00000108539 794 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
Msx1P13297 A730015C16Rik-201ENSMUST00000164855 1221 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
Msx1P13297 Gm43936-201ENSMUST00000203987 490 ntTSL 5 BASIC16.87■□□□□ 0.29
Msx1P13297 Grhpr-201ENSMUST00000045078 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Msx1P13297 Gm5417-201ENSMUST00000079706 384 ntBASIC16.87■□□□□ 0.29
Msx1P13297 Mark2-203ENSMUST00000051711 2867 ntAPPRIS P4 TSL 1 (best) BASIC16.87■□□□□ 0.29
Msx1P13297 Ankib1-201ENSMUST00000043551 6426 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Msx1P13297 Anks1b-208ENSMUST00000182053 1649 ntTSL 5 BASIC16.87■□□□□ 0.29
Msx1P13297 4933428G20Rik-201ENSMUST00000056955 1425 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Msx1P13297 Insig2-201ENSMUST00000003818 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Msx1P13297 Laptm4b-201ENSMUST00000022867 1902 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Msx1P13297 Ap2m1-202ENSMUST00000090023 2080 ntAPPRIS ALT1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Msx1P13297 Prmt3-201ENSMUST00000032715 2507 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Msx1P13297 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC16.86■□□□□ 0.29
Msx1P13297 Tcta-202ENSMUST00000192886 1094 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
Msx1P13297 Gm45337-201ENSMUST00000210537 1267 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
Msx1P13297 AC140264.2-202ENSMUST00000218746 817 ntBASIC16.86■□□□□ 0.29
Msx1P13297 Nme2-202ENSMUST00000072566 734 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Msx1P13297 Chst7-201ENSMUST00000044138 2206 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Msx1P13297 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Msx1P13297 Lrrc73-201ENSMUST00000095262 1384 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Msx1P13297 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
Msx1P13297 Chka-201ENSMUST00000025760 2319 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
Msx1P13297 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Msx1P13297 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Msx1P13297 Cbx1-201ENSMUST00000018810 1824 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Msx1P13297 Sbf1-201ENSMUST00000123791 6190 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
Msx1P13297 Clta-203ENSMUST00000107847 1121 ntTSL 5 BASIC16.85■□□□□ 0.29
Msx1P13297 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC16.85■□□□□ 0.29
Msx1P13297 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
Msx1P13297 Qdpr-208ENSMUST00000197946 1206 ntTSL 5 BASIC16.85■□□□□ 0.29
Msx1P13297 Hsbp1-201ENSMUST00000034300 1208 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Msx1P13297 Gm10549-201ENSMUST00000097634 450 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
Msx1P13297 Slain2-202ENSMUST00000144843 4833 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Msx1P13297 AC123834.2-201ENSMUST00000224038 2340 ntBASIC16.85■□□□□ 0.29
Msx1P13297 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC16.85■□□□□ 0.29
Msx1P13297 Glra1-203ENSMUST00000108853 1797 ntTSL 5 BASIC16.84■□□□□ 0.29
Msx1P13297 AC121961.1-201ENSMUST00000218594 1779 ntBASIC16.84■□□□□ 0.29
Msx1P13297 Bcor-206ENSMUST00000124033 6785 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Msx1P13297 0610010K14Rik-207ENSMUST00000108577 659 ntTSL 5 BASIC16.84■□□□□ 0.29
Msx1P13297 Mrps10-204ENSMUST00000120737 1017 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Msx1P13297 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Msx1P13297 Psmd4-202ENSMUST00000107237 1332 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
Msx1P13297 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Msx1P13297 Capg-202ENSMUST00000114071 1400 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Msx1P13297 K230015D01Rik-201ENSMUST00000211969 1516 ntBASIC16.84■□□□□ 0.29
Msx1P13297 Wnt10b-202ENSMUST00000166022 1594 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Msx1P13297 Gm38308-201ENSMUST00000194934 1809 ntBASIC16.84■□□□□ 0.29
Msx1P13297 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Msx1P13297 Nlrp5-ps-201ENSMUST00000044683 1913 ntTSL 2 BASIC16.84■□□□□ 0.29
Msx1P13297 Usp21-201ENSMUST00000065941 2219 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Msx1P13297 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Msx1P13297 Mgea5-201ENSMUST00000026243 5024 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Msx1P13297 Rassf8-203ENSMUST00000111704 5446 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.29
Msx1P13297 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Msx1P13297 Alad-202ENSMUST00000107444 1247 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Msx1P13297 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
Msx1P13297 Mdfic-202ENSMUST00000120512 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Msx1P13297 Gm15558-201ENSMUST00000126849 2018 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Msx1P13297 2700033N17Rik-201ENSMUST00000140185 721 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Msx1P13297 Mrpl10-201ENSMUST00000001485 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Msx1P13297 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Msx1P13297 Anks1b-225ENSMUST00000182966 1625 ntTSL 5 BASIC16.83■□□□□ 0.28
Msx1P13297 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Msx1P13297 Il4i1-201ENSMUST00000033015 2048 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
Msx1P13297 Tial1-201ENSMUST00000033135 1580 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Msx1P13297 Klhdc1-201ENSMUST00000063445 2620 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Msx1P13297 Man2a1-201ENSMUST00000086723 6991 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Msx1P13297 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
Msx1P13297 Tmem131-208ENSMUST00000194563 6698 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
Msx1P13297 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Msx1P13297 Gm35558-201ENSMUST00000222675 2219 ntBASIC16.82■□□□□ 0.28
Msx1P13297 Myh7b-201ENSMUST00000092995 6163 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 19.7 ms