Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Tmem198-201ENSMUST00000050899 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Chmp6P0C0A3 Tmf1-201ENSMUST00000095664 5732 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Chmp6P0C0A3 Acot8-202ENSMUST00000103094 1152 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Chmp6P0C0A3 Gm12527-201ENSMUST00000117967 564 ntBASIC19.39■□□□□ 0.69
Chmp6P0C0A3 Dmrta2os-202ENSMUST00000141893 691 ntTSL 3 BASIC19.39■□□□□ 0.69
Chmp6P0C0A3 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC19.39■□□□□ 0.69
Chmp6P0C0A3 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Chmp6P0C0A3 Gm27011-201ENSMUST00000182352 972 ntBASIC19.39■□□□□ 0.69
Chmp6P0C0A3 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Chmp6P0C0A3 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Chmp6P0C0A3 2700046G09Rik-201ENSMUST00000181612 1641 ntTSL 2 BASIC19.39■□□□□ 0.69
Chmp6P0C0A3 Anks1b-225ENSMUST00000182966 1625 ntTSL 5 BASIC19.39■□□□□ 0.69
Chmp6P0C0A3 Adra2a-201ENSMUST00000036700 3801 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
Chmp6P0C0A3 Med14-201ENSMUST00000076016 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Chmp6P0C0A3 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Chmp6P0C0A3 Iqsec2-202ENSMUST00000112604 5967 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Chmp6P0C0A3 Snca-201ENSMUST00000114268 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Chmp6P0C0A3 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
Chmp6P0C0A3 Fstl3-201ENSMUST00000020575 1955 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Chmp6P0C0A3 Cpd-201ENSMUST00000021201 7946 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Chmp6P0C0A3 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Chmp6P0C0A3 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Chmp6P0C0A3 Rrp9-201ENSMUST00000047721 1586 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Chmp6P0C0A3 Plekhf2-201ENSMUST00000054776 2977 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Chmp6P0C0A3 Por-201ENSMUST00000005651 2636 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Chmp6P0C0A3 Dpy19l1-203ENSMUST00000142064 3489 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
Chmp6P0C0A3 Gfer-201ENSMUST00000046839 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Chmp6P0C0A3 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Chmp6P0C0A3 Gm45906-201ENSMUST00000208911 1430 ntBASIC19.37■□□□□ 0.69
Chmp6P0C0A3 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
Chmp6P0C0A3 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
Chmp6P0C0A3 Cox18-201ENSMUST00000048363 1333 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
Chmp6P0C0A3 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC19.37■□□□□ 0.69
Chmp6P0C0A3 Gm37811-201ENSMUST00000192416 2601 ntBASIC19.37■□□□□ 0.69
Chmp6P0C0A3 Gm10653-202ENSMUST00000139570 835 ntBASIC19.37■□□□□ 0.69
Chmp6P0C0A3 2700033N17Rik-201ENSMUST00000140185 721 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Chmp6P0C0A3 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Chmp6P0C0A3 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC19.37■□□□□ 0.69
Chmp6P0C0A3 Htr6-202ENSMUST00000105802 2341 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
Chmp6P0C0A3 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
Chmp6P0C0A3 Frmd3-202ENSMUST00000098006 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Chmp6P0C0A3 Eif4g3-202ENSMUST00000084214 6139 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Chmp6P0C0A3 Tyw5-209ENSMUST00000162686 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Chmp6P0C0A3 Kdm2a-202ENSMUST00000075856 7242 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
Chmp6P0C0A3 Snx30-201ENSMUST00000030080 7314 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Chmp6P0C0A3 Tacc3-203ENSMUST00000114426 2187 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
Chmp6P0C0A3 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Chmp6P0C0A3 Edem1-201ENSMUST00000089162 5817 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Chmp6P0C0A3 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC19.36■□□□□ 0.69
Chmp6P0C0A3 B230208B08Rik-201ENSMUST00000173049 404 ntTSL 3 BASIC19.36■□□□□ 0.69
Chmp6P0C0A3 Gm27275-201ENSMUST00000184318 272 ntBASIC19.36■□□□□ 0.69
Chmp6P0C0A3 Tmem145-202ENSMUST00000119703 1781 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
Chmp6P0C0A3 Gmcl1-201ENSMUST00000001185 2949 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Chmp6P0C0A3 Nr1d2-201ENSMUST00000090543 4663 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Chmp6P0C0A3 Krcc1-203ENSMUST00000204436 1687 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Chmp6P0C0A3 Cacna1a-201ENSMUST00000121390 7926 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
Chmp6P0C0A3 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Chmp6P0C0A3 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Chmp6P0C0A3 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Chmp6P0C0A3 Gm11373-201ENSMUST00000129791 2819 ntTSL 5 BASIC19.35■□□□□ 0.69
Chmp6P0C0A3 Ust-201ENSMUST00000061601 4228 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Chmp6P0C0A3 Gm45447-201ENSMUST00000209874 1805 ntTSL 5 BASIC19.35■□□□□ 0.69
Chmp6P0C0A3 Insig2-201ENSMUST00000003818 2697 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Chmp6P0C0A3 Selenos-201ENSMUST00000101801 1191 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Chmp6P0C0A3 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Chmp6P0C0A3 Gm15847-201ENSMUST00000121417 1065 ntBASIC19.35■□□□□ 0.69
Chmp6P0C0A3 Gm11527-201ENSMUST00000153795 596 ntTSL 2 BASIC19.35■□□□□ 0.69
Chmp6P0C0A3 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC19.35■□□□□ 0.69
Chmp6P0C0A3 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Chmp6P0C0A3 Nr1h2-202ENSMUST00000107910 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Chmp6P0C0A3 Gm16054-201ENSMUST00000139469 1819 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Chmp6P0C0A3 Gm45472-201ENSMUST00000211295 1426 ntTSL 5 BASIC19.34■□□□□ 0.69
Chmp6P0C0A3 Gm9194-201ENSMUST00000220749 1447 ntBASIC19.34■□□□□ 0.69
Chmp6P0C0A3 Tfdp2-209ENSMUST00000188750 1713 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
Chmp6P0C0A3 Ocel1-203ENSMUST00000110052 5285 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Chmp6P0C0A3 Klhdc1-201ENSMUST00000063445 2620 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Chmp6P0C0A3 Slc5a10-201ENSMUST00000051552 2261 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Chmp6P0C0A3 Prkaca-201ENSMUST00000005606 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Chmp6P0C0A3 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
Chmp6P0C0A3 Aldoa-ps3-201ENSMUST00000217558 306 ntBASIC19.34■□□□□ 0.69
Chmp6P0C0A3 Plxnd1-201ENSMUST00000015511 6907 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Chmp6P0C0A3 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
Chmp6P0C0A3 Shq1-202ENSMUST00000113312 6816 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Chmp6P0C0A3 Chst2-201ENSMUST00000036267 7328 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Chmp6P0C0A3 Stac2-201ENSMUST00000017544 3050 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Chmp6P0C0A3 Rab11fip5-202ENSMUST00000204087 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
Chmp6P0C0A3 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Chmp6P0C0A3 Tcf7l1-202ENSMUST00000114053 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
Chmp6P0C0A3 Whrn-205ENSMUST00000095038 2665 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
Chmp6P0C0A3 Mboat1-201ENSMUST00000047311 2905 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Chmp6P0C0A3 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Chmp6P0C0A3 Usp6nl-202ENSMUST00000114937 7484 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
Chmp6P0C0A3 Dnajc19-204ENSMUST00000120805 551 ntTSL 2 BASIC19.33■□□□□ 0.68
Chmp6P0C0A3 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC19.33■□□□□ 0.68
Chmp6P0C0A3 Trmt13-210ENSMUST00000198454 880 ntBASIC19.33■□□□□ 0.68
Chmp6P0C0A3 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC19.33■□□□□ 0.68
Chmp6P0C0A3 Nrn1l-201ENSMUST00000060167 617 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
Chmp6P0C0A3 Papola-203ENSMUST00000163473 2544 ntTSL 5 BASIC19.33■□□□□ 0.68
Chmp6P0C0A3 Cnpy1-201ENSMUST00000117098 2661 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Chmp6P0C0A3 Mrpl9-202ENSMUST00000196143 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 20.6 ms