Protein–RNA interactions for Protein: O89116

Vti1a, Vesicle transport through interaction with t-SNAREs homolog 1A, mousemouse

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vti1aO89116 0610040J01Rik-201ENSMUST00000081747 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Vti1aO89116 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Vti1aO89116 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Vti1aO89116 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Vti1aO89116 Atp5g1-203ENSMUST00000107686 691 ntAPPRIS P1 TSL 3 BASIC19.22■□□□□ 0.67
Vti1aO89116 Mir5122-201ENSMUST00000175004 89 ntBASIC19.22■□□□□ 0.67
Vti1aO89116 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC19.22■□□□□ 0.67
Vti1aO89116 Coa6-201ENSMUST00000059093 747 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Vti1aO89116 Hnrnpul2-201ENSMUST00000096753 5726 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Vti1aO89116 Mfsd14a-201ENSMUST00000029570 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Vti1aO89116 Gm8309-201ENSMUST00000206627 1448 ntBASIC19.22■□□□□ 0.67
Vti1aO89116 Atp6v1b1-206ENSMUST00000206911 1591 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Vti1aO89116 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Vti1aO89116 Bcl9l-206ENSMUST00000220303 5760 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Vti1aO89116 Syde1-201ENSMUST00000040580 3288 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Vti1aO89116 Slc16a10-202ENSMUST00000213488 2325 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Vti1aO89116 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
Vti1aO89116 Scrn2-201ENSMUST00000021249 1530 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Vti1aO89116 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Vti1aO89116 Tomm6-202ENSMUST00000113302 749 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Vti1aO89116 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Vti1aO89116 Gm11643-201ENSMUST00000119578 864 ntBASIC19.21■□□□□ 0.67
Vti1aO89116 Cox7a2l-202ENSMUST00000167741 1147 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Vti1aO89116 Fau-203ENSMUST00000179142 736 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Vti1aO89116 Gm37939-201ENSMUST00000192309 447 ntTSL 5 BASIC19.21■□□□□ 0.67
Vti1aO89116 Gm19391-201ENSMUST00000196653 999 ntTSL 3 BASIC19.21■□□□□ 0.67
Vti1aO89116 Gm43183-201ENSMUST00000200632 547 ntBASIC19.21■□□□□ 0.67
Vti1aO89116 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Vti1aO89116 Tpsb2-201ENSMUST00000069616 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Vti1aO89116 Gm10549-201ENSMUST00000097634 450 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
Vti1aO89116 Laptm4b-201ENSMUST00000022867 1902 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Vti1aO89116 Agpat3-202ENSMUST00000105387 1316 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Vti1aO89116 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Vti1aO89116 Unc13b-201ENSMUST00000079978 6354 ntAPPRIS P2 TSL 5 BASIC19.2■□□□□ 0.66
Vti1aO89116 A330009N23Rik-201ENSMUST00000180639 1392 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Vti1aO89116 Nanp-201ENSMUST00000066640 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Vti1aO89116 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Vti1aO89116 Ube2d2a-201ENSMUST00000167406 2393 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
Vti1aO89116 Usp21-201ENSMUST00000065941 2219 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Vti1aO89116 Dpf1-202ENSMUST00000065181 1574 ntAPPRIS ALT1 TSL 5 BASIC19.2■□□□□ 0.66
Vti1aO89116 Maff-201ENSMUST00000096350 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Vti1aO89116 Rint1-204ENSMUST00000117783 560 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Vti1aO89116 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Vti1aO89116 Gm10138-203ENSMUST00000206952 366 ntBASIC19.2■□□□□ 0.66
Vti1aO89116 AC121577.1-201ENSMUST00000227302 707 ntBASIC19.2■□□□□ 0.66
Vti1aO89116 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Vti1aO89116 Anks1b-208ENSMUST00000182053 1649 ntTSL 5 BASIC19.2■□□□□ 0.66
Vti1aO89116 Rusc2-202ENSMUST00000098106 5325 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Vti1aO89116 Blcap-201ENSMUST00000088494 2108 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Vti1aO89116 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Vti1aO89116 Mpc2-201ENSMUST00000027853 1025 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Vti1aO89116 Ap2m1-202ENSMUST00000090023 2080 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Vti1aO89116 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Vti1aO89116 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Vti1aO89116 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
Vti1aO89116 Guca1b-202ENSMUST00000145462 1556 ntTSL 2 BASIC19.19■□□□□ 0.66
Vti1aO89116 Faxc-201ENSMUST00000029908 2627 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Vti1aO89116 Mtss1l-201ENSMUST00000052457 4717 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Vti1aO89116 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Vti1aO89116 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC19.18■□□□□ 0.66
Vti1aO89116 Crtap-201ENSMUST00000084881 1674 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Vti1aO89116 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
Vti1aO89116 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC19.18■□□□□ 0.66
Vti1aO89116 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Vti1aO89116 Gm6209-202ENSMUST00000194629 1506 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Vti1aO89116 Dtwd2-201ENSMUST00000025383 2476 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Vti1aO89116 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Vti1aO89116 Fbxo24-202ENSMUST00000111002 2306 ntTSL 5 BASIC19.18■□□□□ 0.66
Vti1aO89116 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
Vti1aO89116 Thegl-202ENSMUST00000117880 1641 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Vti1aO89116 Zdhhc1-201ENSMUST00000044286 1737 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Vti1aO89116 Amigo1-202ENSMUST00000106656 5482 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Vti1aO89116 Tyw5-209ENSMUST00000162686 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Vti1aO89116 Clta-203ENSMUST00000107847 1121 ntTSL 5 BASIC19.17■□□□□ 0.66
Vti1aO89116 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Vti1aO89116 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC19.17■□□□□ 0.66
Vti1aO89116 Gm42884-202ENSMUST00000202523 423 ntTSL 3 BASIC19.17■□□□□ 0.66
Vti1aO89116 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Vti1aO89116 Lat-201ENSMUST00000032997 1235 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Vti1aO89116 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC19.17■□□□□ 0.66
Vti1aO89116 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Vti1aO89116 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
Vti1aO89116 Rrp15-201ENSMUST00000001339 1321 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Vti1aO89116 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC19.17■□□□□ 0.66
Vti1aO89116 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Vti1aO89116 AC124581.1-201ENSMUST00000225416 1399 ntBASIC19.17■□□□□ 0.66
Vti1aO89116 Plk3-201ENSMUST00000076859 2378 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Vti1aO89116 Mtmr1-201ENSMUST00000015358 4634 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Vti1aO89116 Dbr1-201ENSMUST00000066650 2261 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Vti1aO89116 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
Vti1aO89116 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Vti1aO89116 Naa10-205ENSMUST00000114390 797 ntTSL 5 BASIC19.16■□□□□ 0.66
Vti1aO89116 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
Vti1aO89116 Sct-202ENSMUST00000167790 507 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
Vti1aO89116 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Vti1aO89116 Gm26709-202ENSMUST00000223049 819 ntTSL 5 BASIC19.16■□□□□ 0.66
Vti1aO89116 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC19.16■□□□□ 0.66
Vti1aO89116 Grhpr-201ENSMUST00000045078 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Vti1aO89116 Sct-201ENSMUST00000046156 534 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Vti1aO89116 Grina-201ENSMUST00000023225 1693 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 24.2 ms