Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Lrrc58-201ENSMUST00000078717 8604 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Lmx1bO88609 Ctbp2-201ENSMUST00000033269 2321 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Lmx1bO88609 Isca1-201ENSMUST00000057115 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Lmx1bO88609 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC16.12■□□□□ 0.17
Lmx1bO88609 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC16.12■□□□□ 0.17
Lmx1bO88609 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
Lmx1bO88609 Tfeb-203ENSMUST00000113284 1974 ntTSL 5 BASIC16.12■□□□□ 0.17
Lmx1bO88609 Fam222a-201ENSMUST00000043650 2930 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Lmx1bO88609 Aebp2-202ENSMUST00000087614 3727 ntAPPRIS P4 TSL 1 (best) BASIC16.12■□□□□ 0.17
Lmx1bO88609 Anks1b-208ENSMUST00000182053 1649 ntTSL 5 BASIC16.12■□□□□ 0.17
Lmx1bO88609 Gapvd1-201ENSMUST00000028224 5695 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Lmx1bO88609 B3galnt2-207ENSMUST00000221974 2439 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Lmx1bO88609 Krcc1-203ENSMUST00000204436 1687 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Lmx1bO88609 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
Lmx1bO88609 Ndufv1-202ENSMUST00000128787 1436 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
Lmx1bO88609 Ndufv1-207ENSMUST00000134479 1438 ntTSL 5 BASIC16.11■□□□□ 0.17
Lmx1bO88609 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC16.11■□□□□ 0.17
Lmx1bO88609 St8sia5-202ENSMUST00000079618 1989 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Lmx1bO88609 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Lmx1bO88609 Tfdp2-209ENSMUST00000188750 1713 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
Lmx1bO88609 Rae1-201ENSMUST00000029013 1742 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Lmx1bO88609 Gm45560-201ENSMUST00000211492 1472 ntBASIC16.11■□□□□ 0.17
Lmx1bO88609 Gm43213-201ENSMUST00000151866 1790 ntBASIC16.11■□□□□ 0.17
Lmx1bO88609 Slc9a5-201ENSMUST00000073149 3499 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Lmx1bO88609 Aamp-201ENSMUST00000006462 1817 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
Lmx1bO88609 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Lmx1bO88609 Gm37055-201ENSMUST00000191866 133 ntBASIC16.11■□□□□ 0.17
Lmx1bO88609 Gm9484-201ENSMUST00000195892 1159 ntBASIC16.11■□□□□ 0.17
Lmx1bO88609 Gm10138-203ENSMUST00000206952 366 ntBASIC16.11■□□□□ 0.17
Lmx1bO88609 Gm45337-201ENSMUST00000210537 1267 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
Lmx1bO88609 AC158538.1-201ENSMUST00000225870 294 ntBASIC16.11■□□□□ 0.17
Lmx1bO88609 Prdx5-201ENSMUST00000025904 1262 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Lmx1bO88609 Tmem192-201ENSMUST00000026595 1122 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Lmx1bO88609 Actl6b-205ENSMUST00000139395 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Lmx1bO88609 Rraga-201ENSMUST00000091064 1618 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
Lmx1bO88609 Gpr137b-ps-203ENSMUST00000220758 1942 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Lmx1bO88609 Atp5d-203ENSMUST00000105367 1410 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Lmx1bO88609 Mpp3-203ENSMUST00000107167 2066 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Lmx1bO88609 Sh2b2-204ENSMUST00000196447 1783 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Lmx1bO88609 Slc30a9-204ENSMUST00000162372 5711 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
Lmx1bO88609 Chtop-203ENSMUST00000076639 1842 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Lmx1bO88609 Crocc-202ENSMUST00000097816 6273 ntTSL 5 BASIC16.1■□□□□ 0.17
Lmx1bO88609 Guca1b-202ENSMUST00000145462 1556 ntTSL 2 BASIC16.1■□□□□ 0.17
Lmx1bO88609 Fstl3-201ENSMUST00000020575 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Lmx1bO88609 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
Lmx1bO88609 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC16.1■□□□□ 0.17
Lmx1bO88609 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
Lmx1bO88609 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC16.1■□□□□ 0.17
Lmx1bO88609 Smim10l1-204ENSMUST00000191462 574 ntTSL 3 BASIC16.1■□□□□ 0.17
Lmx1bO88609 Gm43183-201ENSMUST00000200632 547 ntBASIC16.1■□□□□ 0.17
Lmx1bO88609 Gm42545-201ENSMUST00000202755 922 ntBASIC16.1■□□□□ 0.17
Lmx1bO88609 Gabarapl1-202ENSMUST00000204487 902 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Lmx1bO88609 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Lmx1bO88609 Grina-201ENSMUST00000023225 1693 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Lmx1bO88609 Atp9a-203ENSMUST00000109176 3691 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Lmx1bO88609 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Lmx1bO88609 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Lmx1bO88609 BC017158-201ENSMUST00000033044 2627 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Lmx1bO88609 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Lmx1bO88609 Ppp2r1b-206ENSMUST00000175645 1931 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
Lmx1bO88609 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Lmx1bO88609 Tial1-201ENSMUST00000033135 1580 ntAPPRIS ALT1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Lmx1bO88609 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Lmx1bO88609 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
Lmx1bO88609 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Lmx1bO88609 Gm15565-201ENSMUST00000118890 427 ntBASIC16.09■□□□□ 0.17
Lmx1bO88609 Gm15375-201ENSMUST00000119510 849 ntBASIC16.09■□□□□ 0.17
Lmx1bO88609 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Lmx1bO88609 Tbc1d7-201ENSMUST00000021797 1239 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Lmx1bO88609 Thap3-201ENSMUST00000036680 1124 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
Lmx1bO88609 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Lmx1bO88609 1700020N01Rik-201ENSMUST00000057341 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Lmx1bO88609 Gm44544-201ENSMUST00000207052 1844 ntBASIC16.09■□□□□ 0.17
Lmx1bO88609 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Lmx1bO88609 Sh3bp1-202ENSMUST00000061239 1917 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Lmx1bO88609 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Lmx1bO88609 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
Lmx1bO88609 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
Lmx1bO88609 Eomes-202ENSMUST00000111763 2869 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Lmx1bO88609 Thumpd2-201ENSMUST00000025093 1856 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Lmx1bO88609 Atp5g1-203ENSMUST00000107686 691 ntAPPRIS P1 TSL 3 BASIC16.08■□□□□ 0.16
Lmx1bO88609 Calu-208ENSMUST00000173694 611 ntTSL 5 BASIC16.08■□□□□ 0.16
Lmx1bO88609 Krtap5-1-202ENSMUST00000188274 742 ntBASIC16.08■□□□□ 0.16
Lmx1bO88609 Gm18025-201ENSMUST00000221733 862 ntBASIC16.08■□□□□ 0.16
Lmx1bO88609 Ndufa6-201ENSMUST00000023085 560 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Lmx1bO88609 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Lmx1bO88609 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Lmx1bO88609 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
Lmx1bO88609 Gm5464-201ENSMUST00000100453 2156 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
Lmx1bO88609 Psmd4-202ENSMUST00000107237 1332 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
Lmx1bO88609 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Lmx1bO88609 Ltbp4-205ENSMUST00000121175 5118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Lmx1bO88609 Pomgnt2-201ENSMUST00000084743 2365 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Lmx1bO88609 Pomgnt2-207ENSMUST00000217610 2413 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Lmx1bO88609 Ptges3-202ENSMUST00000084771 1559 ntTSL 5 BASIC16.08■□□□□ 0.16
Lmx1bO88609 Ruvbl1-201ENSMUST00000032165 1675 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Lmx1bO88609 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
Lmx1bO88609 Laptm4b-201ENSMUST00000022867 1902 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Lmx1bO88609 Klhl25-201ENSMUST00000092073 3385 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Lmx1bO88609 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC16.07■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 28.7 ms