Protein–RNA interactions for Protein: G3X8Y1

Trim55, MCG19772, mousemouse

Predictions only

Length 545 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim55G3X8Y1 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim55G3X8Y1 Krcc1-203ENSMUST00000204436 1687 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trim55G3X8Y1 Gm16897-201ENSMUST00000180780 2492 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Trim55G3X8Y1 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trim55G3X8Y1 2810474O19Rik-209ENSMUST00000189932 5269 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trim55G3X8Y1 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trim55G3X8Y1 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Trim55G3X8Y1 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trim55G3X8Y1 Zkscan3-208ENSMUST00000224820 5398 ntBASIC18.34■□□□□ 0.53
Trim55G3X8Y1 Klhl29-201ENSMUST00000020958 7041 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trim55G3X8Y1 Rab11fip3-202ENSMUST00000120691 5103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trim55G3X8Y1 Wasf2-201ENSMUST00000084241 5642 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trim55G3X8Y1 Slc5a10-203ENSMUST00000148584 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Trim55G3X8Y1 Epb41l1-204ENSMUST00000103137 6490 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Trim55G3X8Y1 Tcf7l2-203ENSMUST00000111646 2839 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Trim55G3X8Y1 Senp3-202ENSMUST00000066760 2219 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Trim55G3X8Y1 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Trim55G3X8Y1 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Trim55G3X8Y1 Kctd1-202ENSMUST00000168989 3456 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trim55G3X8Y1 Gne-202ENSMUST00000102936 2920 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trim55G3X8Y1 Cnot9-201ENSMUST00000087215 3268 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trim55G3X8Y1 Esrp1-202ENSMUST00000108310 2781 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
Trim55G3X8Y1 Actl6b-205ENSMUST00000139395 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trim55G3X8Y1 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trim55G3X8Y1 Luc7l2-213ENSMUST00000163047 3141 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Trim55G3X8Y1 Rtp2-201ENSMUST00000061030 2421 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim55G3X8Y1 1810013L24Rik-201ENSMUST00000023150 4066 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim55G3X8Y1 Ctnna2-205ENSMUST00000161846 4018 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Trim55G3X8Y1 Crem-234ENSMUST00000154470 1996 ntTSL 5 BASIC18.32■□□□□ 0.52
Trim55G3X8Y1 Rpf1-203ENSMUST00000199079 1978 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Trim55G3X8Y1 Krt9-201ENSMUST00000059707 2580 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim55G3X8Y1 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC18.32■□□□□ 0.52
Trim55G3X8Y1 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC18.32■□□□□ 0.52
Trim55G3X8Y1 Etf1-202ENSMUST00000180351 108 ntBASIC18.32■□□□□ 0.52
Trim55G3X8Y1 Gm43530-201ENSMUST00000195920 274 ntBASIC18.32■□□□□ 0.52
Trim55G3X8Y1 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim55G3X8Y1 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
Trim55G3X8Y1 Cdh24-201ENSMUST00000067784 3489 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
Trim55G3X8Y1 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim55G3X8Y1 Mycl-201ENSMUST00000030407 3501 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim55G3X8Y1 Erlin1-201ENSMUST00000071698 3228 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
Trim55G3X8Y1 Pprc1-203ENSMUST00000111899 5246 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim55G3X8Y1 App-201ENSMUST00000005406 3176 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim55G3X8Y1 Slmap-203ENSMUST00000102956 5476 ntAPPRIS P3 TSL 5 BASIC18.32■□□□□ 0.52
Trim55G3X8Y1 Cep57-208ENSMUST00000147115 2262 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim55G3X8Y1 Atxn7l3-201ENSMUST00000073234 3688 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim55G3X8Y1 Rbpms-203ENSMUST00000053251 2466 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Trim55G3X8Y1 Ofd1-201ENSMUST00000049501 4453 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim55G3X8Y1 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim55G3X8Y1 Meis2-202ENSMUST00000074285 2844 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Trim55G3X8Y1 A830073O21Rik-202ENSMUST00000205693 3096 ntBASIC18.31■□□□□ 0.52
Trim55G3X8Y1 AC154266.1-201ENSMUST00000223190 503 ntBASIC18.31■□□□□ 0.52
Trim55G3X8Y1 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC18.31■□□□□ 0.52
Trim55G3X8Y1 Gm4425-201ENSMUST00000172838 2857 ntTSL 2 BASIC18.31■□□□□ 0.52
Trim55G3X8Y1 Men1-203ENSMUST00000079327 2639 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim55G3X8Y1 Ssfa2-201ENSMUST00000111784 4999 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Trim55G3X8Y1 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim55G3X8Y1 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Trim55G3X8Y1 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim55G3X8Y1 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim55G3X8Y1 Fgfr1-214ENSMUST00000178276 4741 ntTSL 5 BASIC18.3■□□□□ 0.52
Trim55G3X8Y1 Slc35f1-201ENSMUST00000105473 4941 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim55G3X8Y1 Map4k5-201ENSMUST00000049239 4452 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim55G3X8Y1 Rbfox2-204ENSMUST00000171751 3558 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Trim55G3X8Y1 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
Trim55G3X8Y1 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Trim55G3X8Y1 AB124611-203ENSMUST00000173769 1188 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim55G3X8Y1 Efna3-203ENSMUST00000200436 742 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Trim55G3X8Y1 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim55G3X8Y1 Actl6a-201ENSMUST00000029214 2010 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim55G3X8Y1 Tbc1d12-201ENSMUST00000037302 4209 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim55G3X8Y1 Dtx2-203ENSMUST00000111144 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim55G3X8Y1 Hand1-201ENSMUST00000036917 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim55G3X8Y1 Acss3-201ENSMUST00000044668 2494 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Trim55G3X8Y1 Adam23-201ENSMUST00000087374 6426 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim55G3X8Y1 Aqp1-201ENSMUST00000004774 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim55G3X8Y1 Fam78b-206ENSMUST00000190081 4666 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim55G3X8Y1 Adgra3-201ENSMUST00000030971 4480 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim55G3X8Y1 Lancl2-202ENSMUST00000072954 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim55G3X8Y1 Kri1-201ENSMUST00000038671 2598 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim55G3X8Y1 Zc3h14-203ENSMUST00000110104 3146 ntTSL 5 BASIC18.29■□□□□ 0.52
Trim55G3X8Y1 Dhcr24-201ENSMUST00000047973 4028 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim55G3X8Y1 Pgk1-201ENSMUST00000081593 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim55G3X8Y1 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC18.29■□□□□ 0.52
Trim55G3X8Y1 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC18.29■□□□□ 0.52
Trim55G3X8Y1 Oaz1-201ENSMUST00000060987 1071 ntAPPRIS ALT1 TSL 5 BASIC18.29■□□□□ 0.52
Trim55G3X8Y1 Epm2a-201ENSMUST00000069106 3287 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim55G3X8Y1 Fam72a-201ENSMUST00000068613 2191 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim55G3X8Y1 Ttc13-202ENSMUST00000117624 3096 ntTSL 5 BASIC18.29■□□□□ 0.52
Trim55G3X8Y1 Tomm40-201ENSMUST00000032555 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim55G3X8Y1 Plppr5-201ENSMUST00000039564 4670 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim55G3X8Y1 Anapc5-201ENSMUST00000086216 2760 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim55G3X8Y1 Nfkbie-201ENSMUST00000024742 2422 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim55G3X8Y1 Gm43808-201ENSMUST00000202534 2065 ntBASIC18.29■□□□□ 0.52
Trim55G3X8Y1 Dab2ip-202ENSMUST00000091010 6455 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim55G3X8Y1 Zscan29-203ENSMUST00000146243 2894 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Trim55G3X8Y1 Pcsk6-201ENSMUST00000055576 4405 ntAPPRIS P3 TSL 5 BASIC18.28■□□□□ 0.52
Trim55G3X8Y1 Zmym3-201ENSMUST00000063577 6057 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim55G3X8Y1 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC18.28■□□□□ 0.52
Trim55G3X8Y1 Sin3b-203ENSMUST00000212095 1257 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 20.6 ms