Protein–RNA interactions for Protein: F7BJK1

Pcdh1, Protocadherin 1 (Fragment), mousemouse

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh1F7BJK1 Nfix-201ENSMUST00000076715 1403 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Pcdh1F7BJK1 Dscc1-202ENSMUST00000110231 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Pcdh1F7BJK1 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Pcdh1F7BJK1 AC131586.2-201ENSMUST00000228370 1512 ntBASIC16.07■□□□□ 0.16
Pcdh1F7BJK1 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Pcdh1F7BJK1 Ptpa-202ENSMUST00000113601 1838 ntTSL 5 BASIC16.07■□□□□ 0.16
Pcdh1F7BJK1 Dut-201ENSMUST00000051605 1950 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Pcdh1F7BJK1 Atxn7l2-204ENSMUST00000119650 2274 ntTSL 5 BASIC16.07■□□□□ 0.16
Pcdh1F7BJK1 Bmi1-201ENSMUST00000028071 3594 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Pcdh1F7BJK1 Sulf2-201ENSMUST00000088086 3927 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Pcdh1F7BJK1 Axin1-203ENSMUST00000163421 2890 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
Pcdh1F7BJK1 Ppm1a-201ENSMUST00000021514 7668 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Pcdh1F7BJK1 Gm7292-201ENSMUST00000194706 2527 ntBASIC16.06■□□□□ 0.16
Pcdh1F7BJK1 Gm37519-201ENSMUST00000191687 2210 ntBASIC16.06■□□□□ 0.16
Pcdh1F7BJK1 Lgmn-201ENSMUST00000021607 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Pcdh1F7BJK1 Gjb3-201ENSMUST00000046532 1880 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Pcdh1F7BJK1 Nek9-201ENSMUST00000040992 5386 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Pcdh1F7BJK1 Mtx1-201ENSMUST00000073572 1617 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Pcdh1F7BJK1 Gdf1-201ENSMUST00000207684 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Pcdh1F7BJK1 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC16.06■□□□□ 0.16
Pcdh1F7BJK1 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Pcdh1F7BJK1 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Pcdh1F7BJK1 Mpped2-202ENSMUST00000111063 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Pcdh1F7BJK1 6430573F11Rik-202ENSMUST00000135373 2573 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Pcdh1F7BJK1 Atf7-209ENSMUST00000184485 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Pcdh1F7BJK1 Atp11a-201ENSMUST00000033818 7549 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Pcdh1F7BJK1 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Pcdh1F7BJK1 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Pcdh1F7BJK1 Efnb2-201ENSMUST00000001319 4793 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Pcdh1F7BJK1 Gm10461-201ENSMUST00000202073 4786 ntBASIC16.06■□□□□ 0.16
Pcdh1F7BJK1 Tmed4-201ENSMUST00000004508 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Pcdh1F7BJK1 Tbxas1-201ENSMUST00000003017 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Pcdh1F7BJK1 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Pcdh1F7BJK1 Cep68-204ENSMUST00000162811 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Pcdh1F7BJK1 Ubr3-202ENSMUST00000112251 8081 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
Pcdh1F7BJK1 Smad5-203ENSMUST00000109876 4570 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Pcdh1F7BJK1 Sh3bp1-201ENSMUST00000001226 2510 ntTSL 5 BASIC16.05■□□□□ 0.16
Pcdh1F7BJK1 Ankib1-201ENSMUST00000043551 6426 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Pcdh1F7BJK1 Usp21-202ENSMUST00000111305 2278 ntAPPRIS P2 TSL 5 BASIC16.05■□□□□ 0.16
Pcdh1F7BJK1 Paip2-205ENSMUST00000115737 713 ntAPPRIS P1 TSL 3 BASIC16.05■□□□□ 0.16
Pcdh1F7BJK1 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
Pcdh1F7BJK1 E130116L18Rik-201ENSMUST00000066954 306 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
Pcdh1F7BJK1 Gm9988-201ENSMUST00000069786 435 ntBASIC16.05■□□□□ 0.16
Pcdh1F7BJK1 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Pcdh1F7BJK1 Eps8-203ENSMUST00000111878 3560 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Pcdh1F7BJK1 Uri1-201ENSMUST00000085513 3441 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Pcdh1F7BJK1 Prdm6-201ENSMUST00000091900 2601 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Pcdh1F7BJK1 Irgc1-204ENSMUST00000205776 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Pcdh1F7BJK1 Chmp2b-201ENSMUST00000004965 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Pcdh1F7BJK1 Ints8-202ENSMUST00000108318 3169 ntTSL 5 BASIC16.05■□□□□ 0.16
Pcdh1F7BJK1 Tle4-202ENSMUST00000167776 4545 ntAPPRIS ALT1 TSL 5 BASIC16.05■□□□□ 0.16
Pcdh1F7BJK1 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Pcdh1F7BJK1 2700046G09Rik-201ENSMUST00000181612 1641 ntTSL 2 BASIC16.05■□□□□ 0.16
Pcdh1F7BJK1 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC16.04■□□□□ 0.16
Pcdh1F7BJK1 Ache-201ENSMUST00000024099 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Pcdh1F7BJK1 Acp4-203ENSMUST00000118216 1454 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
Pcdh1F7BJK1 Lin9-203ENSMUST00000192561 3160 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Pcdh1F7BJK1 Acp5-204ENSMUST00000213815 1419 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
Pcdh1F7BJK1 Acp5-206ENSMUST00000217643 1447 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
Pcdh1F7BJK1 Zranb2-203ENSMUST00000106058 2924 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Pcdh1F7BJK1 Rnpc3-203ENSMUST00000106536 1839 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
Pcdh1F7BJK1 Isyna1-201ENSMUST00000019283 1836 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Pcdh1F7BJK1 Rps14-202ENSMUST00000118551 602 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
Pcdh1F7BJK1 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC16.04■□□□□ 0.16
Pcdh1F7BJK1 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Pcdh1F7BJK1 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Pcdh1F7BJK1 Rpl13-201ENSMUST00000000756 780 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Pcdh1F7BJK1 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC16.04■□□□□ 0.16
Pcdh1F7BJK1 Hnrnph1-201ENSMUST00000069304 2225 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Pcdh1F7BJK1 D730003I15Rik-202ENSMUST00000194375 1667 ntBASIC16.04■□□□□ 0.16
Pcdh1F7BJK1 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
Pcdh1F7BJK1 Gm9954-202ENSMUST00000198686 4725 ntBASIC16.04■□□□□ 0.16
Pcdh1F7BJK1 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Pcdh1F7BJK1 Glra1-202ENSMUST00000102716 2390 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
Pcdh1F7BJK1 Camsap2-201ENSMUST00000048309 7823 ntAPPRIS P3 TSL 5 BASIC16.03■□□□□ 0.16
Pcdh1F7BJK1 Tekt1-201ENSMUST00000021155 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Pcdh1F7BJK1 Senp3-202ENSMUST00000066760 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Pcdh1F7BJK1 Mink1-201ENSMUST00000072237 4994 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
Pcdh1F7BJK1 Baiap2-204ENSMUST00000106231 4005 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Pcdh1F7BJK1 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Pcdh1F7BJK1 Prcc-201ENSMUST00000005015 2099 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Pcdh1F7BJK1 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Pcdh1F7BJK1 Fbxl21-202ENSMUST00000121095 798 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Pcdh1F7BJK1 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Pcdh1F7BJK1 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC16.03■□□□□ 0.16
Pcdh1F7BJK1 Ndufa5-201ENSMUST00000023851 875 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Pcdh1F7BJK1 Hist1h2ao-201ENSMUST00000091745 480 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
Pcdh1F7BJK1 Spc25-202ENSMUST00000112320 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Pcdh1F7BJK1 Dnajb9-201ENSMUST00000015049 2461 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Pcdh1F7BJK1 Fam171a2-201ENSMUST00000049057 3118 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Pcdh1F7BJK1 Nrm-201ENSMUST00000074259 1466 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Pcdh1F7BJK1 Cfap36-201ENSMUST00000020754 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Pcdh1F7BJK1 Il1rn-201ENSMUST00000114482 1986 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Pcdh1F7BJK1 Dcaf12l2-201ENSMUST00000115057 2885 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
Pcdh1F7BJK1 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
Pcdh1F7BJK1 Gm15743-202ENSMUST00000182690 1901 ntBASIC16.02■□□□□ 0.16
Pcdh1F7BJK1 Sult2b1-204ENSMUST00000209739 1858 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
Pcdh1F7BJK1 Adsl-204ENSMUST00000164806 1595 ntTSL 5 BASIC16.02■□□□□ 0.16
Pcdh1F7BJK1 Fam20c-201ENSMUST00000026972 3582 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Pcdh1F7BJK1 Letm1-201ENSMUST00000005431 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 59.8 ms