Protein–RNA interactions for Protein: E9Q735

Ube4a, Ubiquitin conjugation factor E4 A, mousemouse

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube4aE9Q735 Gapdh-202ENSMUST00000117757 1273 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Ube4aE9Q735 Mir5130-201ENSMUST00000175160 84 ntBASIC21.47■■□□□ 1.03
Ube4aE9Q735 Dusp13-213ENSMUST00000184703 902 ntAPPRIS ALT1 TSL 5 BASIC21.47■■□□□ 1.03
Ube4aE9Q735 Gm42477-201ENSMUST00000202427 469 ntTSL 3 BASIC21.47■■□□□ 1.03
Ube4aE9Q735 Gm11273-201ENSMUST00000044043 390 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
Ube4aE9Q735 Hist1h2aj-201ENSMUST00000091710 352 ntBASIC21.47■■□□□ 1.03
Ube4aE9Q735 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Ube4aE9Q735 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Ube4aE9Q735 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
Ube4aE9Q735 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
Ube4aE9Q735 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Ube4aE9Q735 Tspan10-201ENSMUST00000044105 1680 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Ube4aE9Q735 Mpig6b-201ENSMUST00000097337 2252 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Ube4aE9Q735 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Ube4aE9Q735 Agap2-202ENSMUST00000217941 5573 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
Ube4aE9Q735 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
Ube4aE9Q735 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Ube4aE9Q735 Gm7638-201ENSMUST00000121348 967 ntBASIC21.46■■□□□ 1.03
Ube4aE9Q735 Ramp2-202ENSMUST00000122006 899 ntTSL 2 BASIC21.46■■□□□ 1.03
Ube4aE9Q735 Ccdc125-202ENSMUST00000170347 1216 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
Ube4aE9Q735 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
Ube4aE9Q735 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
Ube4aE9Q735 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
Ube4aE9Q735 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
Ube4aE9Q735 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
Ube4aE9Q735 Pigu-201ENSMUST00000077626 1636 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
Ube4aE9Q735 Sirt1-201ENSMUST00000020257 3905 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
Ube4aE9Q735 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Ube4aE9Q735 Gm6627-201ENSMUST00000218299 2386 ntBASIC21.46■■□□□ 1.03
Ube4aE9Q735 Ggt6-202ENSMUST00000100903 1387 ntTSL 5 BASIC21.46■■□□□ 1.03
Ube4aE9Q735 Lyrm4-201ENSMUST00000053265 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Ube4aE9Q735 Spry1-202ENSMUST00000108107 2773 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Ube4aE9Q735 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
Ube4aE9Q735 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Ube4aE9Q735 Gm45623-201ENSMUST00000210744 1457 ntAPPRIS P1 BASIC21.45■■□□□ 1.03
Ube4aE9Q735 Mark2-207ENSMUST00000165286 2975 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.03
Ube4aE9Q735 Phldb3-201ENSMUST00000073325 2273 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
Ube4aE9Q735 Pdlim5-211ENSMUST00000198381 1555 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
Ube4aE9Q735 Krt19-201ENSMUST00000007317 1576 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Ube4aE9Q735 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Ube4aE9Q735 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Ube4aE9Q735 0610040J01Rik-201ENSMUST00000081747 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Ube4aE9Q735 Gm14114-201ENSMUST00000139345 287 ntTSL 3 BASIC21.45■■□□□ 1.02
Ube4aE9Q735 Arpc4-204ENSMUST00000204802 794 ntTSL 3 BASIC21.45■■□□□ 1.02
Ube4aE9Q735 Cnn1-203ENSMUST00000214601 1225 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
Ube4aE9Q735 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Ube4aE9Q735 Rpl21-202ENSMUST00000075453 899 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Ube4aE9Q735 Paox-202ENSMUST00000097967 1024 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
Ube4aE9Q735 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
Ube4aE9Q735 Scamp4-201ENSMUST00000079883 1804 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Ube4aE9Q735 Gm6093-201ENSMUST00000221792 1623 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Ube4aE9Q735 Gm10013-201ENSMUST00000106074 672 ntBASIC21.44■■□□□ 1.02
Ube4aE9Q735 Gm4217-201ENSMUST00000182243 1002 ntBASIC21.44■■□□□ 1.02
Ube4aE9Q735 Eif1b-201ENSMUST00000007139 1035 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Ube4aE9Q735 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Ube4aE9Q735 Bdkrb1-202ENSMUST00000182899 1313 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
Ube4aE9Q735 Bdkrb1-201ENSMUST00000041229 1338 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
Ube4aE9Q735 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC21.44■■□□□ 1.02
Ube4aE9Q735 Blcap-201ENSMUST00000088494 2108 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Ube4aE9Q735 Csf3-201ENSMUST00000038886 1413 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Ube4aE9Q735 Klhdc1-201ENSMUST00000063445 2620 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Ube4aE9Q735 Cdc123-201ENSMUST00000043864 1827 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Ube4aE9Q735 Gja3-201ENSMUST00000061614 2766 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Ube4aE9Q735 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC21.43■■□□□ 1.02
Ube4aE9Q735 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Ube4aE9Q735 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Ube4aE9Q735 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Ube4aE9Q735 Nxt1-202ENSMUST00000109961 1116 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
Ube4aE9Q735 Gm14453-201ENSMUST00000139677 553 ntTSL 3 BASIC21.43■■□□□ 1.02
Ube4aE9Q735 Steap1-201ENSMUST00000015796 1230 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Ube4aE9Q735 Qdpr-208ENSMUST00000197946 1206 ntTSL 5 BASIC21.43■■□□□ 1.02
Ube4aE9Q735 Nxt1-201ENSMUST00000047177 956 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Ube4aE9Q735 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Ube4aE9Q735 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC21.43■■□□□ 1.02
Ube4aE9Q735 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC21.43■■□□□ 1.02
Ube4aE9Q735 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Ube4aE9Q735 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Ube4aE9Q735 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Ube4aE9Q735 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC21.42■■□□□ 1.02
Ube4aE9Q735 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Ube4aE9Q735 Tlcd2-202ENSMUST00000108435 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
Ube4aE9Q735 Pdcd5-202ENSMUST00000120714 767 ntTSL 3 BASIC21.42■■□□□ 1.02
Ube4aE9Q735 Gm20033-201ENSMUST00000180470 572 ntTSL 3 BASIC21.42■■□□□ 1.02
Ube4aE9Q735 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
Ube4aE9Q735 Mpdu1-201ENSMUST00000018905 1321 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Ube4aE9Q735 Gm38342-201ENSMUST00000195710 2980 ntBASIC21.42■■□□□ 1.02
Ube4aE9Q735 Tra2a-204ENSMUST00000204189 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
Ube4aE9Q735 Rgcc-201ENSMUST00000022595 918 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Ube4aE9Q735 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC21.42■■□□□ 1.02
Ube4aE9Q735 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Ube4aE9Q735 Kctd13-201ENSMUST00000032924 1676 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Ube4aE9Q735 Noxa1-201ENSMUST00000044018 1617 ntAPPRIS P3 TSL 1 (best) BASIC21.42■■□□□ 1.02
Ube4aE9Q735 F2rl3-201ENSMUST00000058099 1751 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Ube4aE9Q735 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC21.42■■□□□ 1.02
Ube4aE9Q735 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Ube4aE9Q735 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
Ube4aE9Q735 Olig2-201ENSMUST00000035608 2437 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Ube4aE9Q735 Mpp3-203ENSMUST00000107167 2066 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Ube4aE9Q735 Mthfd2-201ENSMUST00000005810 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Ube4aE9Q735 Sapcd2-202ENSMUST00000100323 1761 ntAPPRIS ALT2 TSL 2 BASIC21.41■■□□□ 1.02
Retrieved 100 of 76,532 protein–RNA pairs in 19.4 ms