Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Scgb1b15-201ENSMUST00000189118 417 ntAPPRIS P1 TSL 5 BASIC4.48□□□□□ -1.69
Hmgb3O54879 Gm37135-201ENSMUST00000192652 534 ntBASIC4.48□□□□□ -1.69
Hmgb3O54879 Gm37030-201ENSMUST00000194254 295 ntBASIC4.48□□□□□ -1.69
Hmgb3O54879 Gm42646-201ENSMUST00000202233 914 ntBASIC4.48□□□□□ -1.69
Hmgb3O54879 Gm19764-201ENSMUST00000203630 649 ntBASIC4.48□□□□□ -1.69
Hmgb3O54879 Axdnd1-210ENSMUST00000212747 1238 ntTSL 5 BASIC4.48□□□□□ -1.69
Hmgb3O54879 Gm3266-201ENSMUST00000217832 591 ntBASIC4.48□□□□□ -1.69
Hmgb3O54879 CU062626.1-201ENSMUST00000225248 505 ntBASIC4.48□□□□□ -1.69
Hmgb3O54879 AC135292.2-201ENSMUST00000227559 367 ntBASIC4.48□□□□□ -1.69
Hmgb3O54879 Dppa3-201ENSMUST00000049644 833 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
Hmgb3O54879 Defb42-201ENSMUST00000067990 618 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
Hmgb3O54879 Klrc3-201ENSMUST00000071149 715 ntAPPRIS P2 TSL 1 (best) BASIC4.48□□□□□ -1.69
Hmgb3O54879 Platr26-201ENSMUST00000079720 641 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
Hmgb3O54879 Reg3b-201ENSMUST00000096904 783 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
Hmgb3O54879 Rpl29-202ENSMUST00000098994 583 ntAPPRIS P1 TSL 2 BASIC4.48□□□□□ -1.69
Hmgb3O54879 Gm37606-201ENSMUST00000191816 3116 ntBASIC4.48□□□□□ -1.69
Hmgb3O54879 Vmn1r46-204ENSMUST00000228231 13338 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
Hmgb3O54879 Cnot7-203ENSMUST00000132032 2542 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
Hmgb3O54879 Cnga1-205ENSMUST00000201463 2510 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
Hmgb3O54879 Gm5844-201ENSMUST00000119417 2191 ntBASIC4.48□□□□□ -1.69
Hmgb3O54879 Zfp78-206ENSMUST00000208390 2965 ntAPPRIS ALT2 TSL 1 (best) BASIC4.48□□□□□ -1.69
Hmgb3O54879 Gm44829-201ENSMUST00000208008 3193 ntBASIC4.48□□□□□ -1.69
Hmgb3O54879 Hfm1-202ENSMUST00000117588 4870 ntAPPRIS P1 TSL 5 BASIC4.48□□□□□ -1.69
Hmgb3O54879 Gm37051-201ENSMUST00000194535 2943 ntBASIC4.48□□□□□ -1.69
Hmgb3O54879 Olfr1277-202ENSMUST00000214760 5944 ntAPPRIS P1 TSL 5 BASIC4.48□□□□□ -1.69
Hmgb3O54879 Ehf-203ENSMUST00000111176 3696 ntTSL 5 BASIC4.48□□□□□ -1.69
Hmgb3O54879 Ehf-202ENSMUST00000111174 1307 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
Hmgb3O54879 Lrrc39-201ENSMUST00000029573 3087 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
Hmgb3O54879 Vmn2r95-201ENSMUST00000166327 2538 ntAPPRIS P1 TSL 5 BASIC4.47□□□□□ -1.69
Hmgb3O54879 Gm42662-201ENSMUST00000202539 1431 ntBASIC4.47□□□□□ -1.69
Hmgb3O54879 Mrgprb2-201ENSMUST00000052730 2077 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
Hmgb3O54879 AC155941.5-201ENSMUST00000218925 1505 ntTSL 5 BASIC4.47□□□□□ -1.69
Hmgb3O54879 Far2-202ENSMUST00000111607 3395 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
Hmgb3O54879 Mbnl3-204ENSMUST00000136404 1632 ntAPPRIS ALT2 TSL 5 BASIC4.47□□□□□ -1.69
Hmgb3O54879 Tbc1d23-201ENSMUST00000023431 3690 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
Hmgb3O54879 Mysm1-201ENSMUST00000075872 7420 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
Hmgb3O54879 Gm38067-201ENSMUST00000192346 1911 ntBASIC4.47□□□□□ -1.69
Hmgb3O54879 Pkhd1l1-202ENSMUST00000166957 12747 ntTSL 5 BASIC4.47□□□□□ -1.69
Hmgb3O54879 Pkhd1l1-201ENSMUST00000038336 12741 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
Hmgb3O54879 Usp46-201ENSMUST00000068058 4557 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
Hmgb3O54879 Mir688-201ENSMUST00000102055 75 ntBASIC4.47□□□□□ -1.69
Hmgb3O54879 Ica1-202ENSMUST00000115518 1256 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
Hmgb3O54879 Gm23839-201ENSMUST00000116957 109 ntBASIC4.47□□□□□ -1.69
Hmgb3O54879 Gm9506-201ENSMUST00000118516 320 ntBASIC4.47□□□□□ -1.69
Hmgb3O54879 Gm13444-201ENSMUST00000119445 522 ntBASIC4.47□□□□□ -1.69
Hmgb3O54879 Gm7571-201ENSMUST00000120252 927 ntBASIC4.47□□□□□ -1.69
Hmgb3O54879 Gm7494-201ENSMUST00000121248 441 ntBASIC4.47□□□□□ -1.69
Hmgb3O54879 Cav1-209ENSMUST00000150901 380 ntTSL 2 BASIC4.47□□□□□ -1.69
Hmgb3O54879 Ptprtos-201ENSMUST00000151688 630 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
Hmgb3O54879 Crem-235ENSMUST00000154705 529 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
Hmgb3O54879 Gm24422-201ENSMUST00000157800 119 ntBASIC4.47□□□□□ -1.69
Hmgb3O54879 Ptpn4-204ENSMUST00000163621 431 ntTSL 3 BASIC4.47□□□□□ -1.69
Hmgb3O54879 Nedd8-202ENSMUST00000163750 514 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
Hmgb3O54879 Gm5218-201ENSMUST00000172270 465 ntAPPRIS P1 BASIC4.47□□□□□ -1.69
Hmgb3O54879 Gm20690-201ENSMUST00000177341 315 ntBASIC4.47□□□□□ -1.69
Hmgb3O54879 Speer4c-202ENSMUST00000179506 480 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
Hmgb3O54879 Gm8993-201ENSMUST00000182182 983 ntBASIC4.47□□□□□ -1.69
Hmgb3O54879 Ly6e-206ENSMUST00000187284 654 ntAPPRIS P1 TSL 5 BASIC4.47□□□□□ -1.69
Hmgb3O54879 Gm28387-201ENSMUST00000189245 854 ntTSL 3 BASIC4.47□□□□□ -1.69
Hmgb3O54879 Gimd1-202ENSMUST00000196701 654 ntAPPRIS P1 TSL 3 BASIC4.47□□□□□ -1.69
Hmgb3O54879 Mark1-ps2-201ENSMUST00000197823 384 ntBASIC4.47□□□□□ -1.69
Hmgb3O54879 AC151967.1-201ENSMUST00000198146 76 ntBASIC4.47□□□□□ -1.69
Hmgb3O54879 Gm42886-201ENSMUST00000199214 466 ntBASIC4.47□□□□□ -1.69
Hmgb3O54879 1700001N15Rik-201ENSMUST00000199380 482 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
Hmgb3O54879 Gm43033-201ENSMUST00000199682 425 ntBASIC4.47□□□□□ -1.69
Hmgb3O54879 Gm36696-201ENSMUST00000205418 438 ntTSL 2 BASIC4.47□□□□□ -1.69
Hmgb3O54879 Gm44787-202ENSMUST00000208339 1069 ntTSL 5 BASIC4.47□□□□□ -1.69
Hmgb3O54879 Gm44781-201ENSMUST00000208480 601 ntTSL 3 BASIC4.47□□□□□ -1.69
Hmgb3O54879 Ldhc-204ENSMUST00000210585 1071 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
Hmgb3O54879 Gm45724-201ENSMUST00000213031 420 ntBASIC4.47□□□□□ -1.69
Hmgb3O54879 Gm33728-201ENSMUST00000217285 546 ntTSL 3 BASIC4.47□□□□□ -1.69
Hmgb3O54879 Olfr976-203ENSMUST00000217360 1164 ntAPPRIS ALT2 BASIC4.47□□□□□ -1.69
Hmgb3O54879 AC153557.1-201ENSMUST00000217697 403 ntBASIC4.47□□□□□ -1.69
Hmgb3O54879 AC134439.2-201ENSMUST00000221950 467 ntBASIC4.47□□□□□ -1.69
Hmgb3O54879 AC154767.2-201ENSMUST00000224584 414 ntBASIC4.47□□□□□ -1.69
Hmgb3O54879 AC114008.1-201ENSMUST00000226193 937 ntBASIC4.47□□□□□ -1.69
Hmgb3O54879 AC131710.2-201ENSMUST00000226773 683 ntBASIC4.47□□□□□ -1.69
Hmgb3O54879 AC154323.1-201ENSMUST00000228329 1231 ntBASIC4.47□□□□□ -1.69
Hmgb3O54879 Ssmem1-202ENSMUST00000031798 1155 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
Hmgb3O54879 Agr3-201ENSMUST00000042101 826 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
Hmgb3O54879 Ccdc54-201ENSMUST00000062439 1296 ntAPPRIS P1 BASIC4.47□□□□□ -1.69
Hmgb3O54879 Sprr2k-201ENSMUST00000067102 637 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
Hmgb3O54879 Olfr1337-201ENSMUST00000077247 951 ntAPPRIS P1 BASIC4.47□□□□□ -1.69
Hmgb3O54879 Olfr875-201ENSMUST00000080634 1004 ntAPPRIS P1 BASIC4.47□□□□□ -1.69
Hmgb3O54879 Gm23795-201ENSMUST00000084006 137 ntBASIC4.47□□□□□ -1.69
Hmgb3O54879 Eda2r-201ENSMUST00000037353 4752 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
Hmgb3O54879 Gm3985-201ENSMUST00000132101 2515 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
Hmgb3O54879 Pum2-204ENSMUST00000163569 3560 ntAPPRIS P3 TSL 1 (best) BASIC4.47□□□□□ -1.69
Hmgb3O54879 AY512915-203ENSMUST00000159937 3650 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
Hmgb3O54879 Gm43834-201ENSMUST00000197097 4830 ntBASIC4.47□□□□□ -1.69
Hmgb3O54879 Pnpla8-202ENSMUST00000122902 2728 ntAPPRIS ALT2 TSL 1 (best) BASIC4.47□□□□□ -1.69
Hmgb3O54879 Inpp4b-203ENSMUST00000109852 4095 ntAPPRIS ALT2 TSL 5 BASIC4.47□□□□□ -1.69
Hmgb3O54879 Olfr888-202ENSMUST00000211851 2930 ntAPPRIS P1 TSL 2 BASIC4.47□□□□□ -1.69
Hmgb3O54879 Gm38335-201ENSMUST00000195727 1789 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
Hmgb3O54879 Olfr448-202ENSMUST00000213952 3024 ntAPPRIS P1 TSL 5 BASIC4.47□□□□□ -1.69
Hmgb3O54879 Gm12388-201ENSMUST00000119112 1887 ntBASIC4.47□□□□□ -1.69
Hmgb3O54879 Gm10032-201ENSMUST00000071522 1887 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
Hmgb3O54879 Rbm46-202ENSMUST00000182637 2058 ntTSL 5 BASIC4.47□□□□□ -1.69
Hmgb3O54879 Olfr698-204ENSMUST00000216255 4024 ntAPPRIS P1 TSL 5 BASIC4.47□□□□□ -1.69
Hmgb3O54879 Olfr384-202ENSMUST00000214228 2576 ntAPPRIS P1 TSL 5 BASIC4.47□□□□□ -1.69
Retrieved 100 of 76,532 protein–RNA pairs in 71.9 ms