Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim3Q9R1R2 Klf13-201ENSMUST00000063694 6396 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim3Q9R1R2 Gm43548-201ENSMUST00000197139 2353 ntBASIC16.8■□□□□ 0.28
Trim3Q9R1R2 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim3Q9R1R2 Gm16054-201ENSMUST00000139469 1819 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Trim3Q9R1R2 Gm37811-201ENSMUST00000192416 2601 ntBASIC16.8■□□□□ 0.28
Trim3Q9R1R2 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim3Q9R1R2 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
Trim3Q9R1R2 Gm12669-201ENSMUST00000122162 1009 ntBASIC16.8■□□□□ 0.28
Trim3Q9R1R2 AC122769.4-201ENSMUST00000228166 901 ntBASIC16.8■□□□□ 0.28
Trim3Q9R1R2 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim3Q9R1R2 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim3Q9R1R2 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim3Q9R1R2 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Trim3Q9R1R2 Fam222a-201ENSMUST00000043650 2930 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim3Q9R1R2 Nr1h2-202ENSMUST00000107910 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim3Q9R1R2 Frmd3-202ENSMUST00000098006 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim3Q9R1R2 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim3Q9R1R2 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Trim3Q9R1R2 Unc13b-201ENSMUST00000079978 6354 ntAPPRIS P2 TSL 5 BASIC16.79■□□□□ 0.28
Trim3Q9R1R2 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC16.79■□□□□ 0.28
Trim3Q9R1R2 Rab20-201ENSMUST00000033900 1392 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim3Q9R1R2 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim3Q9R1R2 Ube2i-213ENSMUST00000174031 824 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim3Q9R1R2 Gm37805-201ENSMUST00000192612 1094 ntBASIC16.79■□□□□ 0.28
Trim3Q9R1R2 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Trim3Q9R1R2 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC16.79■□□□□ 0.28
Trim3Q9R1R2 Rab3c-203ENSMUST00000224180 967 ntBASIC16.79■□□□□ 0.28
Trim3Q9R1R2 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim3Q9R1R2 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC16.79■□□□□ 0.28
Trim3Q9R1R2 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Trim3Q9R1R2 Ccdc91-201ENSMUST00000032441 2459 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim3Q9R1R2 Npepl1-201ENSMUST00000044415 2467 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim3Q9R1R2 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
Trim3Q9R1R2 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Trim3Q9R1R2 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim3Q9R1R2 Galk1-201ENSMUST00000021114 1406 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim3Q9R1R2 Ermp1-203ENSMUST00000159692 7058 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim3Q9R1R2 Tyw5-209ENSMUST00000162686 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim3Q9R1R2 Ankrd17-203ENSMUST00000168058 9311 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
Trim3Q9R1R2 G730003C15Rik-202ENSMUST00000189096 2309 ntBASIC16.78■□□□□ 0.28
Trim3Q9R1R2 Park7-201ENSMUST00000030805 908 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim3Q9R1R2 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
Trim3Q9R1R2 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
Trim3Q9R1R2 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
Trim3Q9R1R2 Cyp4f14-202ENSMUST00000179434 2207 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
Trim3Q9R1R2 Cyp4f14-201ENSMUST00000054174 2207 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim3Q9R1R2 Gm43672-201ENSMUST00000199072 1731 ntBASIC16.78■□□□□ 0.28
Trim3Q9R1R2 Henmt1-202ENSMUST00000098680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim3Q9R1R2 Akp3-201ENSMUST00000044878 1680 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim3Q9R1R2 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim3Q9R1R2 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Trim3Q9R1R2 Shq1-202ENSMUST00000113312 6816 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Trim3Q9R1R2 Gmcl1-201ENSMUST00000001185 2949 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Trim3Q9R1R2 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
Trim3Q9R1R2 Dmtn-207ENSMUST00000228001 2437 ntBASIC16.77■□□□□ 0.28
Trim3Q9R1R2 Wac-207ENSMUST00000167020 5208 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
Trim3Q9R1R2 Creg1-202ENSMUST00000111432 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Trim3Q9R1R2 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC16.77■□□□□ 0.28
Trim3Q9R1R2 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC16.77■□□□□ 0.28
Trim3Q9R1R2 Gm27011-201ENSMUST00000182352 972 ntBASIC16.77■□□□□ 0.28
Trim3Q9R1R2 Nr2c2ap-202ENSMUST00000211898 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Trim3Q9R1R2 1110004E09Rik-201ENSMUST00000023694 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Trim3Q9R1R2 Theg-202ENSMUST00000077433 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Trim3Q9R1R2 Tbc1d2b-202ENSMUST00000128874 3473 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
Trim3Q9R1R2 Gm8309-201ENSMUST00000206627 1448 ntBASIC16.77■□□□□ 0.27
Trim3Q9R1R2 Anks1b-208ENSMUST00000182053 1649 ntTSL 5 BASIC16.77■□□□□ 0.27
Trim3Q9R1R2 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
Trim3Q9R1R2 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
Trim3Q9R1R2 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
Trim3Q9R1R2 Gm5464-201ENSMUST00000100453 2156 ntAPPRIS P1 BASIC16.77■□□□□ 0.27
Trim3Q9R1R2 Ddx59-201ENSMUST00000027655 2166 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Trim3Q9R1R2 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Trim3Q9R1R2 Tagln-201ENSMUST00000034590 1595 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Trim3Q9R1R2 Smox-209ENSMUST00000110189 1919 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Trim3Q9R1R2 Gm11373-201ENSMUST00000129791 2819 ntTSL 5 BASIC16.76■□□□□ 0.27
Trim3Q9R1R2 Nxn-201ENSMUST00000021204 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Trim3Q9R1R2 AC160393.1-201ENSMUST00000218378 1279 ntBASIC16.76■□□□□ 0.27
Trim3Q9R1R2 AC107452.1-201ENSMUST00000227963 481 ntBASIC16.76■□□□□ 0.27
Trim3Q9R1R2 Gng10-201ENSMUST00000041160 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Trim3Q9R1R2 Znrf4-201ENSMUST00000052211 1236 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
Trim3Q9R1R2 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Trim3Q9R1R2 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Trim3Q9R1R2 Ndufv1-202ENSMUST00000128787 1436 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
Trim3Q9R1R2 Ndufv1-207ENSMUST00000134479 1438 ntTSL 5 BASIC16.76■□□□□ 0.27
Trim3Q9R1R2 Zc3h15-201ENSMUST00000081591 2111 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Trim3Q9R1R2 Nbea-201ENSMUST00000029374 10986 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
Trim3Q9R1R2 Edem1-201ENSMUST00000089162 5817 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Trim3Q9R1R2 Acvr2b-205ENSMUST00000215746 3175 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Trim3Q9R1R2 Coq8b-202ENSMUST00000108378 2276 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Trim3Q9R1R2 Mrpl10-201ENSMUST00000001485 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Trim3Q9R1R2 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Trim3Q9R1R2 Sept9-201ENSMUST00000019038 3784 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Trim3Q9R1R2 Ndel1-203ENSMUST00000108672 1653 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Trim3Q9R1R2 Gm38308-201ENSMUST00000194934 1809 ntBASIC16.75■□□□□ 0.27
Trim3Q9R1R2 Gm45447-201ENSMUST00000209874 1805 ntTSL 5 BASIC16.75■□□□□ 0.27
Trim3Q9R1R2 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Trim3Q9R1R2 Ncoa5-203ENSMUST00000122070 3117 ntTSL 5 BASIC16.75■□□□□ 0.27
Trim3Q9R1R2 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC16.75■□□□□ 0.27
Trim3Q9R1R2 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 44.6 ms