Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Scn11aQ9R053 Gm35558-201ENSMUST00000222675 2219 ntBASIC21.33■■□□□ 1.01
Scn11aQ9R053 Pgam1-ps2-201ENSMUST00000117129 765 ntBASIC21.33■■□□□ 1.01
Scn11aQ9R053 Gm14114-201ENSMUST00000139345 287 ntTSL 3 BASIC21.33■■□□□ 1.01
Scn11aQ9R053 Stk11-210ENSMUST00000213772 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
Scn11aQ9R053 AC159205.6-201ENSMUST00000224935 887 ntBASIC21.33■■□□□ 1.01
Scn11aQ9R053 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Scn11aQ9R053 Larp1b-206ENSMUST00000191872 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
Scn11aQ9R053 Dlk2-202ENSMUST00000166280 1341 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Scn11aQ9R053 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1.01
Scn11aQ9R053 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Scn11aQ9R053 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Scn11aQ9R053 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Scn11aQ9R053 Lyrm4-201ENSMUST00000053265 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Scn11aQ9R053 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
Scn11aQ9R053 Tfpt-202ENSMUST00000108641 1166 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
Scn11aQ9R053 Gm4217-201ENSMUST00000182243 1002 ntBASIC21.33■■□□□ 1
Scn11aQ9R053 Hpn-209ENSMUST00000168884 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Scn11aQ9R053 Fcgrt-201ENSMUST00000003512 1770 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1
Scn11aQ9R053 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Scn11aQ9R053 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC21.32■■□□□ 1
Scn11aQ9R053 Dolk-201ENSMUST00000100219 2104 ntAPPRIS P1 BASIC21.32■■□□□ 1
Scn11aQ9R053 Gm10616-201ENSMUST00000205285 2127 ntBASIC21.32■■□□□ 1
Scn11aQ9R053 Psme2-208ENSMUST00000161807 962 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Scn11aQ9R053 Insl6-201ENSMUST00000052380 708 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Scn11aQ9R053 Nkx2-9-201ENSMUST00000072631 1264 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Scn11aQ9R053 Tspan10-201ENSMUST00000044105 1680 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Scn11aQ9R053 E030042O20Rik-201ENSMUST00000135244 1427 ntTSL 1 (best) BASIC21.32■■□□□ 1
Scn11aQ9R053 Trim54-201ENSMUST00000013771 1434 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
Scn11aQ9R053 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
Scn11aQ9R053 Snx3-202ENSMUST00000105499 1057 ntTSL 5 BASIC21.31■■□□□ 1
Scn11aQ9R053 AA414768-201ENSMUST00000121924 1257 ntBASIC21.31■■□□□ 1
Scn11aQ9R053 Dctn3-201ENSMUST00000030158 973 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Scn11aQ9R053 Cebpg-201ENSMUST00000070191 914 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
Scn11aQ9R053 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC21.31■■□□□ 1
Scn11aQ9R053 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
Scn11aQ9R053 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC21.31■■□□□ 1
Scn11aQ9R053 Ppp1r1b-204ENSMUST00000137634 1343 ntTSL 1 (best) BASIC21.31■■□□□ 1
Scn11aQ9R053 Fam166b-201ENSMUST00000052829 1349 ntTSL 1 (best) BASIC21.31■■□□□ 1
Scn11aQ9R053 St8sia5-202ENSMUST00000079618 1989 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Scn11aQ9R053 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Scn11aQ9R053 4430402I18Rik-205ENSMUST00000162110 1559 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
Scn11aQ9R053 Aig1-205ENSMUST00000162610 1554 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Scn11aQ9R053 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Scn11aQ9R053 Atp6v0b-208ENSMUST00000150204 935 ntTSL 5 BASIC21.31■■□□□ 1
Scn11aQ9R053 Gm16105-201ENSMUST00000156926 697 ntTSL 3 BASIC21.31■■□□□ 1
Scn11aQ9R053 Gm43353-201ENSMUST00000199224 1295 ntBASIC21.31■■□□□ 1
Scn11aQ9R053 Dlgap1-209ENSMUST00000140728 2173 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
Scn11aQ9R053 Phldb3-201ENSMUST00000073325 2273 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
Scn11aQ9R053 Prmt6-201ENSMUST00000106567 2450 ntAPPRIS P1 BASIC21.3■■□□□ 1
Scn11aQ9R053 Tnk1-202ENSMUST00000108626 1798 ntTSL 1 (best) BASIC21.3■■□□□ 1
Scn11aQ9R053 Krt86-201ENSMUST00000088049 1960 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Scn11aQ9R053 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Scn11aQ9R053 Gm16295-201ENSMUST00000139512 643 ntTSL 3 BASIC21.3■■□□□ 1
Scn11aQ9R053 Gm27463-201ENSMUST00000183569 57 ntBASIC21.3■■□□□ 1
Scn11aQ9R053 Atg101-201ENSMUST00000048393 1230 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Scn11aQ9R053 Pex14-201ENSMUST00000103217 2006 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Scn11aQ9R053 Gm9774-202ENSMUST00000192538 1392 ntAPPRIS P1 BASIC21.29■■□□□ 1
Scn11aQ9R053 Chmp6-201ENSMUST00000026434 1557 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Scn11aQ9R053 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
Scn11aQ9R053 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Scn11aQ9R053 Abhd11-206ENSMUST00000154469 1473 ntTSL 1 (best) BASIC21.29■■□□□ 1
Scn11aQ9R053 Lce1j-201ENSMUST00000107304 420 ntAPPRIS P1 BASIC21.29■■□□□ 1
Scn11aQ9R053 Mark2-207ENSMUST00000165286 2975 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
Scn11aQ9R053 Tmem81-201ENSMUST00000058167 1742 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Scn11aQ9R053 Gm5464-201ENSMUST00000100453 2156 ntAPPRIS P1 BASIC21.29■■□□□ 1
Scn11aQ9R053 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC21.29■■□□□ 1
Scn11aQ9R053 Cdc123-201ENSMUST00000043864 1827 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Scn11aQ9R053 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Scn11aQ9R053 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC21.29■■□□□ 1
Scn11aQ9R053 Plxdc1-202ENSMUST00000107564 619 ntTSL 2 BASIC21.28■■□□□ 1
Scn11aQ9R053 Ndufb11-201ENSMUST00000116621 908 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Scn11aQ9R053 Gm7461-201ENSMUST00000058918 827 ntBASIC21.28■■□□□ 1
Scn11aQ9R053 Zpbp2-202ENSMUST00000081033 1300 ntTSL 1 (best) BASIC21.28■■□□□ 1
Scn11aQ9R053 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
Scn11aQ9R053 Gja3-201ENSMUST00000061614 2766 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Scn11aQ9R053 Gm24841-201ENSMUST00000158676 357 ntBASIC21.28■■□□□ 1
Scn11aQ9R053 Sae1-203ENSMUST00000210999 1254 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Scn11aQ9R053 Mrpl21-201ENSMUST00000025743 802 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
Scn11aQ9R053 Banf1-201ENSMUST00000025762 735 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Scn11aQ9R053 Tm6sf2-202ENSMUST00000110160 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC21.27■■□□□ 1
Scn11aQ9R053 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Scn11aQ9R053 Zfas1-205ENSMUST00000189909 738 ntTSL 1 (best) BASIC21.27■■□□□ 1
Scn11aQ9R053 Gm9731-201ENSMUST00000209480 747 ntBASIC21.27■■□□□ 1
Scn11aQ9R053 Stx3-208ENSMUST00000211641 1018 ntTSL 1 (best) BASIC21.27■■□□□ 1
Scn11aQ9R053 Gm7370-201ENSMUST00000219471 767 ntBASIC21.27■■□□□ 1
Scn11aQ9R053 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC21.27■■□□□ 1
Scn11aQ9R053 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC21.27■■□□□ 1
Scn11aQ9R053 Chst8-203ENSMUST00000154629 2079 ntTSL 5 BASIC21.27■□□□□ 0.99
Scn11aQ9R053 Klc3-202ENSMUST00000108457 1632 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
Scn11aQ9R053 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Scn11aQ9R053 Scamp4-201ENSMUST00000079883 1804 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Scn11aQ9R053 Cldn18-203ENSMUST00000131922 860 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Scn11aQ9R053 Gm12781-201ENSMUST00000146269 395 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Scn11aQ9R053 Gm3764-209ENSMUST00000181550 1093 ntTSL 3 BASIC21.26■□□□□ 0.99
Scn11aQ9R053 Slc35d2-204ENSMUST00000222168 472 ntTSL 3 BASIC21.26■□□□□ 0.99
Scn11aQ9R053 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Scn11aQ9R053 9030624G23Rik-201ENSMUST00000101538 2245 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Scn11aQ9R053 Igfbp2-201ENSMUST00000047328 1307 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Scn11aQ9R053 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 20.7 ms