Protein–RNA interactions for Protein: Q9QZR9

Col4a4, Collagen alpha-4(IV) chain, mousemouse

Predictions only

Length 1,682 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col4a4Q9QZR9 Gm13285-201ENSMUST00000179725 1462 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
Col4a4Q9QZR9 Tnnt2-205ENSMUST00000178204 1172 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
Col4a4Q9QZR9 Tnnt2-207ENSMUST00000179863 1097 ntAPPRIS P4 TSL 5 BASIC18.05■□□□□ 0.48
Col4a4Q9QZR9 Lce1k-201ENSMUST00000179917 663 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
Col4a4Q9QZR9 1600014C10Rik-209ENSMUST00000179992 568 ntTSL 3 BASIC18.05■□□□□ 0.48
Col4a4Q9QZR9 Tnnt2-209ENSMUST00000188028 1200 ntAPPRIS P4 TSL 5 BASIC18.05■□□□□ 0.48
Col4a4Q9QZR9 AC132104.2-201ENSMUST00000215011 266 ntBASIC18.05■□□□□ 0.48
Col4a4Q9QZR9 Lce1a1-201ENSMUST00000074142 705 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Col4a4Q9QZR9 Fbxo36-201ENSMUST00000097672 901 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Col4a4Q9QZR9 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Col4a4Q9QZR9 H2-DMa-201ENSMUST00000042121 1555 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Col4a4Q9QZR9 Eme2-202ENSMUST00000121542 1521 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Col4a4Q9QZR9 Oraov1-203ENSMUST00000105895 1016 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
Col4a4Q9QZR9 Speg-202ENSMUST00000113587 1254 ntTSL 5 BASIC18.04■□□□□ 0.48
Col4a4Q9QZR9 Has3-202ENSMUST00000175987 1154 ntTSL 5 BASIC18.04■□□□□ 0.48
Col4a4Q9QZR9 Cyhr1-204ENSMUST00000177359 1110 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Col4a4Q9QZR9 Olfr572-203ENSMUST00000215782 1233 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
Col4a4Q9QZR9 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Col4a4Q9QZR9 Eif1a-202ENSMUST00000168382 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Col4a4Q9QZR9 Vgf-202ENSMUST00000186451 2277 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
Col4a4Q9QZR9 Ccdc69-201ENSMUST00000055040 1402 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Col4a4Q9QZR9 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Col4a4Q9QZR9 Urah-202ENSMUST00000106050 719 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
Col4a4Q9QZR9 Gm6623-201ENSMUST00000173570 544 ntBASIC18.03■□□□□ 0.48
Col4a4Q9QZR9 Gm43073-201ENSMUST00000198200 1189 ntBASIC18.03■□□□□ 0.48
Col4a4Q9QZR9 Gm5864-201ENSMUST00000202263 970 ntBASIC18.03■□□□□ 0.48
Col4a4Q9QZR9 Tssc4-208ENSMUST00000208779 647 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Col4a4Q9QZR9 AC124569.2-201ENSMUST00000225998 818 ntBASIC18.03■□□□□ 0.48
Col4a4Q9QZR9 Gm9991-201ENSMUST00000070048 1207 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Col4a4Q9QZR9 Pla2g2c-201ENSMUST00000030530 1618 ntAPPRIS P1 TSL 3 BASIC18.03■□□□□ 0.48
Col4a4Q9QZR9 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Col4a4Q9QZR9 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Col4a4Q9QZR9 A930029G22Rik-201ENSMUST00000181032 1710 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Col4a4Q9QZR9 Stx3-202ENSMUST00000069285 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Col4a4Q9QZR9 Hmga1-206ENSMUST00000119486 1003 ntAPPRIS P3 TSL 2 BASIC18.03■□□□□ 0.48
Col4a4Q9QZR9 Pafah1b3-201ENSMUST00000005583 901 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Col4a4Q9QZR9 Klhdc8b-214ENSMUST00000195435 1612 ntTSL 5 BASIC18.02■□□□□ 0.48
Col4a4Q9QZR9 Trim25-202ENSMUST00000100627 1433 ntTSL 5 BASIC18.02■□□□□ 0.48
Col4a4Q9QZR9 Inip-202ENSMUST00000107526 1438 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Col4a4Q9QZR9 Kcnk10-203ENSMUST00000221305 1357 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Col4a4Q9QZR9 Pacsin3-203ENSMUST00000111349 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Col4a4Q9QZR9 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Col4a4Q9QZR9 Platr15-201ENSMUST00000147128 768 ntTSL 5 BASIC18.02■□□□□ 0.47
Col4a4Q9QZR9 Gm27525-201ENSMUST00000184465 107 ntBASIC18.02■□□□□ 0.47
Col4a4Q9QZR9 Gm43347-201ENSMUST00000200226 580 ntBASIC18.02■□□□□ 0.47
Col4a4Q9QZR9 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.47
Col4a4Q9QZR9 F2rl3-201ENSMUST00000058099 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Col4a4Q9QZR9 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Col4a4Q9QZR9 Ccdc34-201ENSMUST00000028580 2070 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Col4a4Q9QZR9 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC18.01■□□□□ 0.47
Col4a4Q9QZR9 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Col4a4Q9QZR9 Adal-203ENSMUST00000110662 1231 ntTSL 5 BASIC18.01■□□□□ 0.47
Col4a4Q9QZR9 Gm26039-201ENSMUST00000158152 144 ntBASIC18.01■□□□□ 0.47
Col4a4Q9QZR9 Mpst-202ENSMUST00000167140 1279 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
Col4a4Q9QZR9 Arhgap33-206ENSMUST00000208522 781 ntTSL 3 BASIC18.01■□□□□ 0.47
Col4a4Q9QZR9 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Col4a4Q9QZR9 Notum-202ENSMUST00000106177 2212 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
Col4a4Q9QZR9 Riox1-201ENSMUST00000053744 2344 ntAPPRIS P1 BASIC18■□□□□ 0.47
Col4a4Q9QZR9 Tmem79-202ENSMUST00000107552 2063 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
Col4a4Q9QZR9 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Col4a4Q9QZR9 Rpp40-202ENSMUST00000174230 1053 ntTSL 5 BASIC18■□□□□ 0.47
Col4a4Q9QZR9 Gm26887-201ENSMUST00000181282 547 ntTSL 5 BASIC18■□□□□ 0.47
Col4a4Q9QZR9 Gm29791-202ENSMUST00000207888 369 ntBASIC18■□□□□ 0.47
Col4a4Q9QZR9 Hist1h4j-201ENSMUST00000087714 774 ntAPPRIS P1 BASIC18■□□□□ 0.47
Col4a4Q9QZR9 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Col4a4Q9QZR9 Rpl3l-202ENSMUST00000170239 1375 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
Col4a4Q9QZR9 Mpig6b-201ENSMUST00000097337 2252 ntTSL 1 (best) BASIC18■□□□□ 0.47
Col4a4Q9QZR9 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Col4a4Q9QZR9 Stac2-201ENSMUST00000017544 3050 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Col4a4Q9QZR9 Olfm1-204ENSMUST00000113920 2513 ntTSL 1 (best) BASIC18■□□□□ 0.47
Col4a4Q9QZR9 Ubl3-201ENSMUST00000079324 2537 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Col4a4Q9QZR9 Best2-201ENSMUST00000059072 1971 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Col4a4Q9QZR9 Gm16181-201ENSMUST00000118793 567 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Col4a4Q9QZR9 Surf1-201ENSMUST00000015934 1173 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Col4a4Q9QZR9 Gm18206-201ENSMUST00000207027 926 ntBASIC17.99■□□□□ 0.47
Col4a4Q9QZR9 Nudt21-204ENSMUST00000212981 1184 ntTSL 3 BASIC17.99■□□□□ 0.47
Col4a4Q9QZR9 AC159301.1-201ENSMUST00000225130 1182 ntBASIC17.99■□□□□ 0.47
Col4a4Q9QZR9 4430402I18Rik-205ENSMUST00000162110 1559 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
Col4a4Q9QZR9 Trim47-202ENSMUST00000106441 2192 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Col4a4Q9QZR9 Ctsf-201ENSMUST00000119694 1975 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Col4a4Q9QZR9 Sstr1-202ENSMUST00000110671 1752 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
Col4a4Q9QZR9 Gm21586-201ENSMUST00000107988 264 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Col4a4Q9QZR9 Gm21953-201ENSMUST00000108002 264 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
Col4a4Q9QZR9 1700020A23Rik-202ENSMUST00000110281 521 ntAPPRIS P1 TSL 3 BASIC17.99■□□□□ 0.47
Col4a4Q9QZR9 Gm20878-208ENSMUST00000181518 264 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Col4a4Q9QZR9 Snhg4-201ENSMUST00000181664 1190 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Col4a4Q9QZR9 Pts-206ENSMUST00000214873 511 ntTSL 5 BASIC17.99■□□□□ 0.47
Col4a4Q9QZR9 Mrpl36-203ENSMUST00000222030 680 ntAPPRIS P1 TSL 3 BASIC17.99■□□□□ 0.47
Col4a4Q9QZR9 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
Col4a4Q9QZR9 Eva1c-202ENSMUST00000099543 1554 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Col4a4Q9QZR9 Gm34220-201ENSMUST00000223001 2709 ntBASIC17.99■□□□□ 0.47
Col4a4Q9QZR9 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Col4a4Q9QZR9 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC17.98■□□□□ 0.47
Col4a4Q9QZR9 Fcgrt-201ENSMUST00000003512 1770 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Col4a4Q9QZR9 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Col4a4Q9QZR9 Zfp943-202ENSMUST00000153985 1598 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Col4a4Q9QZR9 Tnnt1-203ENSMUST00000108587 1059 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Col4a4Q9QZR9 Tmed5-204ENSMUST00000118036 1045 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Col4a4Q9QZR9 Hnrnpa1l2-ps-201ENSMUST00000129154 964 ntBASIC17.98■□□□□ 0.47
Col4a4Q9QZR9 Edf1-201ENSMUST00000015236 722 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Retrieved 100 of 76,532 protein–RNA pairs in 20.4 ms