Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Slc2a13-202ENSMUST00000109283 6536 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Lima1Q9ERG0 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Lima1Q9ERG0 Slc7a5-201ENSMUST00000045557 3517 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Lima1Q9ERG0 Nelfb-201ENSMUST00000059849 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Lima1Q9ERG0 Map3k7-202ENSMUST00000080933 5669 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
Lima1Q9ERG0 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC17.66■□□□□ 0.42
Lima1Q9ERG0 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Lima1Q9ERG0 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Lima1Q9ERG0 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Lima1Q9ERG0 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Lima1Q9ERG0 Frmd5-203ENSMUST00000121219 2262 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Lima1Q9ERG0 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC17.66■□□□□ 0.42
Lima1Q9ERG0 Sft2d2-201ENSMUST00000043338 5535 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Lima1Q9ERG0 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Lima1Q9ERG0 Donson-201ENSMUST00000023682 2360 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Lima1Q9ERG0 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Lima1Q9ERG0 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Lima1Q9ERG0 Hikeshi-206ENSMUST00000153470 2224 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Lima1Q9ERG0 Gm26676-201ENSMUST00000181877 2226 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Lima1Q9ERG0 Noxa1-201ENSMUST00000044018 1617 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Lima1Q9ERG0 Proser2-201ENSMUST00000054254 2061 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Lima1Q9ERG0 Adam33-201ENSMUST00000052104 2795 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Lima1Q9ERG0 Lhpp-202ENSMUST00000106170 999 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Lima1Q9ERG0 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Lima1Q9ERG0 Gm27027-201ENSMUST00000183110 547 ntAPPRIS P1 TSL 3 BASIC17.65■□□□□ 0.42
Lima1Q9ERG0 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC17.65■□□□□ 0.42
Lima1Q9ERG0 AC099934.2-201ENSMUST00000196389 70 ntBASIC17.65■□□□□ 0.42
Lima1Q9ERG0 AC156953.1-201ENSMUST00000196953 70 ntBASIC17.65■□□□□ 0.42
Lima1Q9ERG0 Gm8969-201ENSMUST00000199694 526 ntBASIC17.65■□□□□ 0.42
Lima1Q9ERG0 AC157822.2-201ENSMUST00000200291 70 ntBASIC17.65■□□□□ 0.42
Lima1Q9ERG0 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC17.65■□□□□ 0.42
Lima1Q9ERG0 Grifin-201ENSMUST00000042993 613 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Lima1Q9ERG0 Ppp2ca-201ENSMUST00000020608 7102 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Lima1Q9ERG0 Tha1-201ENSMUST00000033230 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Lima1Q9ERG0 Dscr3-201ENSMUST00000023615 2547 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Lima1Q9ERG0 Xpr1-202ENSMUST00000111774 2753 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Lima1Q9ERG0 Map3k1-201ENSMUST00000109267 6978 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
Lima1Q9ERG0 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC17.65■□□□□ 0.42
Lima1Q9ERG0 Lonrf1-201ENSMUST00000065297 3930 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
Lima1Q9ERG0 Adcy2-201ENSMUST00000022013 4211 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
Lima1Q9ERG0 Ino80e-201ENSMUST00000050833 1944 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
Lima1Q9ERG0 Dusp8-201ENSMUST00000039926 4804 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
Lima1Q9ERG0 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC17.64■□□□□ 0.42
Lima1Q9ERG0 Cyr61-201ENSMUST00000029846 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Lima1Q9ERG0 Gm19554-201ENSMUST00000220934 2076 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Lima1Q9ERG0 Hspa8-201ENSMUST00000015800 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Lima1Q9ERG0 Tmem51os1-202ENSMUST00000141769 2131 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Lima1Q9ERG0 Slc37a3-211ENSMUST00000202749 434 ntTSL 5 BASIC17.64■□□□□ 0.41
Lima1Q9ERG0 Serbp1-216ENSMUST00000205106 1288 ntTSL 5 BASIC17.64■□□□□ 0.41
Lima1Q9ERG0 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
Lima1Q9ERG0 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Lima1Q9ERG0 Card10-202ENSMUST00000164826 4726 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Lima1Q9ERG0 Trim44-201ENSMUST00000102573 5612 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Lima1Q9ERG0 Sh3bp1-201ENSMUST00000001226 2510 ntTSL 5 BASIC17.64■□□□□ 0.41
Lima1Q9ERG0 Zdhhc6-201ENSMUST00000076891 2263 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Lima1Q9ERG0 Gnas-208ENSMUST00000109087 1716 ntAPPRIS P4 TSL 1 (best) BASIC17.64■□□□□ 0.41
Lima1Q9ERG0 Zdhhc1-201ENSMUST00000044286 1737 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Lima1Q9ERG0 Pcdhac2-201ENSMUST00000047479 5888 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Lima1Q9ERG0 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Lima1Q9ERG0 Nrxn2-202ENSMUST00000113458 3503 ntTSL 5 BASIC17.63■□□□□ 0.41
Lima1Q9ERG0 Scube2-202ENSMUST00000106728 2890 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
Lima1Q9ERG0 Mtmr3-202ENSMUST00000109943 5674 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Lima1Q9ERG0 Tgds-204ENSMUST00000228543 1594 ntBASIC17.63■□□□□ 0.41
Lima1Q9ERG0 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC17.63■□□□□ 0.41
Lima1Q9ERG0 Lrch4-201ENSMUST00000031734 3078 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
Lima1Q9ERG0 Gm13534-201ENSMUST00000121169 513 ntBASIC17.63■□□□□ 0.41
Lima1Q9ERG0 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Lima1Q9ERG0 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Lima1Q9ERG0 Cnn2-201ENSMUST00000004784 2460 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Lima1Q9ERG0 Gdf15-202ENSMUST00000110103 1380 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Lima1Q9ERG0 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Lima1Q9ERG0 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Lima1Q9ERG0 Dnaaf5-203ENSMUST00000196441 2426 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Lima1Q9ERG0 Acsl3-205ENSMUST00000142704 2976 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Lima1Q9ERG0 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
Lima1Q9ERG0 6430573F11Rik-202ENSMUST00000135373 2573 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Lima1Q9ERG0 Klhdc8a-201ENSMUST00000046071 4269 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Lima1Q9ERG0 1810059C17Rik-201ENSMUST00000125173 487 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Lima1Q9ERG0 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Lima1Q9ERG0 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC17.62■□□□□ 0.41
Lima1Q9ERG0 Gm37564-201ENSMUST00000195000 330 ntTSL 5 BASIC17.62■□□□□ 0.41
Lima1Q9ERG0 Gm42778-201ENSMUST00000199644 553 ntBASIC17.62■□□□□ 0.41
Lima1Q9ERG0 AC107452.1-201ENSMUST00000227963 481 ntBASIC17.62■□□□□ 0.41
Lima1Q9ERG0 Smim10l1-201ENSMUST00000100864 2842 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
Lima1Q9ERG0 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Lima1Q9ERG0 Fiz1-208ENSMUST00000208944 2306 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Lima1Q9ERG0 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Lima1Q9ERG0 Acss2-202ENSMUST00000065973 2876 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Lima1Q9ERG0 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Lima1Q9ERG0 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Lima1Q9ERG0 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC17.62■□□□□ 0.41
Lima1Q9ERG0 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Lima1Q9ERG0 Slc2a8-201ENSMUST00000028129 2108 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Lima1Q9ERG0 Sgsm1-204ENSMUST00000112325 2274 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Lima1Q9ERG0 Mff-208ENSMUST00000160786 1645 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Lima1Q9ERG0 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Lima1Q9ERG0 Glra1-202ENSMUST00000102716 2390 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
Lima1Q9ERG0 Schip1-203ENSMUST00000170788 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Lima1Q9ERG0 Marc2-201ENSMUST00000068725 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Lima1Q9ERG0 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 31.6 ms