Protein–RNA interactions for Protein: Q9EQM3

Nkx2-4, Homeobox protein Nkx-2.4, mousemouse

Predictions only

Length 354 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx2-4Q9EQM3 Spdya-202ENSMUST00000124001 1247 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Nkx2-4Q9EQM3 Pih1d2-201ENSMUST00000000171 1256 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Nkx2-4Q9EQM3 Pdxk-ps-203ENSMUST00000183934 680 ntTSL 3 BASIC18.38■□□□□ 0.53
Nkx2-4Q9EQM3 2010010A06Rik-202ENSMUST00000186356 694 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Nkx2-4Q9EQM3 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC18.38■□□□□ 0.53
Nkx2-4Q9EQM3 Mrpl14-201ENSMUST00000024734 645 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Nkx2-4Q9EQM3 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Nkx2-4Q9EQM3 Rnf208-202ENSMUST00000114355 1333 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
Nkx2-4Q9EQM3 Gpsm3-201ENSMUST00000038244 1343 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Nkx2-4Q9EQM3 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Nkx2-4Q9EQM3 Pdgfa-203ENSMUST00000110896 1363 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
Nkx2-4Q9EQM3 Rpp25-201ENSMUST00000080514 1423 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
Nkx2-4Q9EQM3 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Nkx2-4Q9EQM3 Spint1-203ENSMUST00000110817 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Nkx2-4Q9EQM3 Eif2b4-202ENSMUST00000114603 1966 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Nkx2-4Q9EQM3 1700007L15Rik-201ENSMUST00000180923 737 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Nkx2-4Q9EQM3 Gm43514-201ENSMUST00000198852 424 ntBASIC18.37■□□□□ 0.53
Nkx2-4Q9EQM3 Spem1-201ENSMUST00000045771 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Nkx2-4Q9EQM3 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC18.37■□□□□ 0.53
Nkx2-4Q9EQM3 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
Nkx2-4Q9EQM3 Rell2-202ENSMUST00000091932 1995 ntTSL 2 BASIC18.37■□□□□ 0.53
Nkx2-4Q9EQM3 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Nkx2-4Q9EQM3 Dscam-201ENSMUST00000056102 7498 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Nkx2-4Q9EQM3 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Nkx2-4Q9EQM3 Rps27a-202ENSMUST00000102845 791 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Nkx2-4Q9EQM3 Prkcz-203ENSMUST00000105624 694 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Nkx2-4Q9EQM3 Dpy30-201ENSMUST00000112571 790 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
Nkx2-4Q9EQM3 Znhit2-201ENSMUST00000162726 1281 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
Nkx2-4Q9EQM3 Hrh3-204ENSMUST00000165248 1224 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
Nkx2-4Q9EQM3 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC18.36■□□□□ 0.53
Nkx2-4Q9EQM3 Fam71e1-202ENSMUST00000205359 1307 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
Nkx2-4Q9EQM3 Fstl3-201ENSMUST00000020575 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Nkx2-4Q9EQM3 Gm7213-201ENSMUST00000215977 950 ntBASIC18.36■□□□□ 0.53
Nkx2-4Q9EQM3 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Nkx2-4Q9EQM3 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Nkx2-4Q9EQM3 Samd10-201ENSMUST00000060173 2164 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Nkx2-4Q9EQM3 Cltb-202ENSMUST00000091609 2186 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Nkx2-4Q9EQM3 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
Nkx2-4Q9EQM3 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
Nkx2-4Q9EQM3 Oxct2b-201ENSMUST00000102648 1735 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
Nkx2-4Q9EQM3 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Nkx2-4Q9EQM3 4933427J07Rik-201ENSMUST00000156275 1533 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Nkx2-4Q9EQM3 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Nkx2-4Q9EQM3 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Nkx2-4Q9EQM3 Gm6443-201ENSMUST00000203599 874 ntBASIC18.35■□□□□ 0.53
Nkx2-4Q9EQM3 Upk3a-201ENSMUST00000023070 1106 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Nkx2-4Q9EQM3 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Nkx2-4Q9EQM3 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Nkx2-4Q9EQM3 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
Nkx2-4Q9EQM3 Ndufv1-202ENSMUST00000128787 1436 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
Nkx2-4Q9EQM3 Ndufv1-207ENSMUST00000134479 1438 ntTSL 5 BASIC18.34■□□□□ 0.53
Nkx2-4Q9EQM3 Csf3-201ENSMUST00000038886 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Nkx2-4Q9EQM3 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Nkx2-4Q9EQM3 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Nkx2-4Q9EQM3 Nnat-202ENSMUST00000109526 1213 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
Nkx2-4Q9EQM3 Tmsb10-202ENSMUST00000114049 690 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Nkx2-4Q9EQM3 Gm11355-201ENSMUST00000121120 306 ntBASIC18.34■□□□□ 0.53
Nkx2-4Q9EQM3 Gm11950-201ENSMUST00000121615 838 ntBASIC18.34■□□□□ 0.53
Nkx2-4Q9EQM3 Rpl14-201ENSMUST00000165532 1009 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Nkx2-4Q9EQM3 Gm32031-203ENSMUST00000208993 649 ntTSL 2 BASIC18.34■□□□□ 0.53
Nkx2-4Q9EQM3 Rpl36al-201ENSMUST00000054544 526 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Nkx2-4Q9EQM3 Gm8994-201ENSMUST00000077886 1236 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
Nkx2-4Q9EQM3 Dbr1-201ENSMUST00000066650 2261 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Nkx2-4Q9EQM3 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Nkx2-4Q9EQM3 Eva1c-202ENSMUST00000099543 1554 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Nkx2-4Q9EQM3 Bin1-201ENSMUST00000025239 2451 ntAPPRIS P3 TSL 2 BASIC18.33■□□□□ 0.53
Nkx2-4Q9EQM3 2810408A11Rik-201ENSMUST00000018714 1485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
Nkx2-4Q9EQM3 Golph3-202ENSMUST00000226517 2359 ntBASIC18.33■□□□□ 0.53
Nkx2-4Q9EQM3 Dgat1-201ENSMUST00000023214 1888 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Nkx2-4Q9EQM3 Galnt14-202ENSMUST00000112591 1843 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Nkx2-4Q9EQM3 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC18.33■□□□□ 0.53
Nkx2-4Q9EQM3 Tpd52l1-201ENSMUST00000000305 1308 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
Nkx2-4Q9EQM3 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
Nkx2-4Q9EQM3 Gm12963-201ENSMUST00000131846 783 ntTSL 5 BASIC18.33■□□□□ 0.52
Nkx2-4Q9EQM3 Rbm4-203ENSMUST00000178615 1018 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Nkx2-4Q9EQM3 Gm26661-201ENSMUST00000181025 471 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
Nkx2-4Q9EQM3 Gm18115-201ENSMUST00000221209 621 ntBASIC18.33■□□□□ 0.52
Nkx2-4Q9EQM3 Otx2os1-206ENSMUST00000228153 787 ntBASIC18.33■□□□□ 0.52
Nkx2-4Q9EQM3 Spr-ps1-201ENSMUST00000089584 605 ntBASIC18.33■□□□□ 0.52
Nkx2-4Q9EQM3 Gm43006-201ENSMUST00000197702 1602 ntBASIC18.33■□□□□ 0.52
Nkx2-4Q9EQM3 Olfr94-203ENSMUST00000222190 1611 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
Nkx2-4Q9EQM3 Pigu-201ENSMUST00000077626 1636 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Nkx2-4Q9EQM3 Rab11b-203ENSMUST00000173860 1544 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Nkx2-4Q9EQM3 Mroh6-201ENSMUST00000184858 2216 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
Nkx2-4Q9EQM3 Pcbp1-201ENSMUST00000053015 1830 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
Nkx2-4Q9EQM3 Tgif1-209ENSMUST00000166395 1714 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Nkx2-4Q9EQM3 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Nkx2-4Q9EQM3 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
Nkx2-4Q9EQM3 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Nkx2-4Q9EQM3 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Nkx2-4Q9EQM3 Zbed3-202ENSMUST00000221807 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Nkx2-4Q9EQM3 Npb-202ENSMUST00000106194 530 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
Nkx2-4Q9EQM3 Npb-203ENSMUST00000106195 542 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
Nkx2-4Q9EQM3 Slc19a2-204ENSMUST00000169394 894 ntTSL 5 BASIC18.32■□□□□ 0.52
Nkx2-4Q9EQM3 Flg-207ENSMUST00000180293 768 ntAPPRIS ALT2 BASIC18.32■□□□□ 0.52
Nkx2-4Q9EQM3 Hist1h2bc-201ENSMUST00000018246 1156 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Nkx2-4Q9EQM3 Gm44930-202ENSMUST00000208733 689 ntTSL 5 BASIC18.32■□□□□ 0.52
Nkx2-4Q9EQM3 Pigf-201ENSMUST00000024957 988 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Nkx2-4Q9EQM3 Hist1h2ba-201ENSMUST00000052776 384 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
Nkx2-4Q9EQM3 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 28.7 ms